BiocGenerics

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see BiocGenerics.

S4 generic functions for Bioconductor


Bioconductor version: 3.6

S4 generic functions needed by many Bioconductor packages.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocGenerics")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Infrastructure, Software
Version 0.24.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License Artistic-2.0
Depends methods, utils, graphics, stats, parallel
Imports methods, utils, graphics, stats, parallel
System Requirements
URL
See More
Suggests Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase, annotate, RUnit
Linking To
Enhances
Depends On Me ACME, affy, affyPLM, altcdfenvs, amplican, AnnotationDbi, AnnotationForge, AnnotationHub, ATACseqQC, beadarray, bioassayR, Biobase, Biostrings, bnbc, BSgenome, bsseq, Cardinal, Category, categoryCompare, ChAMPdata, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, codelink, consensusSeekeR, copynumber, CRISPRseek, cummeRbund, DelayedArray, DESeq, dexus, ensembldb, ensemblVEP, ExperimentHub, ExperimentHubData, FEM, flowQ, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicScores, Genominator, genoset, ggbio, girafe, graph, GRridge, GSEABase, GUIDEseq, HelloRanges, htSeqTools, interactiveDisplay, interactiveDisplayBase, IRanges, MBASED, MeSHDbi, meshr, methyAnalysis, MIGSA, MineICA, minfi, MLInterfaces, MotifDb, MotIV, mpra, MSnbase, multtest, NADfinder, oligo, OrganismDbi, pandaR, Pbase, PICS, plethy, PSICQUIC, PWMEnrich, RareVariantVis, REDseq, Repitools, rMAT, RNAprobR, RnBeads, RPA, rsbml, S4Vectors, scsR, shinyMethyl, ShortRead, simpleaffy, simulatorZ, soGGi, TEQC, tigre, topdownr, topGO, UNDO, UniProt.ws, VanillaICE, VariantAnnotation, VariantFiltering, XVector, yamss
Imports Me affycoretools, affylmGUI, AllelicImbalance, AneuFinder, annmap, annotate, AnnotationDbi, AnnotationHubData, ArrayExpressHTS, ASpli, bamsignals, BASiCS, biocGraph, biosvd, biovizBase, BiSeq, blima, BrowserViz, BrowserVizDemo, BSgenome, BubbleTree, bumphunter, casper, cellHTS2, cgdv17, cghMCR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIPComp, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, chromVAR, clusterSeq, cn.mops, CNEr, CNPBayes, cobindR, compEpiTools, crlmm, crossmeta, csaw, cummeRbund, curatedCRCData, curatedOvarianData, ddCt, DEGreport, DESeq2, destiny, DEXSeq, diffHic, DirichletMultinomial, DOQTL, DRIMSeq, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, epigenomix, epivizrStandalone, erma, esATAC, FamAgg, fastseg, ffpe, FindMyFriends, flowBin, flowClust, flowCore, flowFP, flowQ, FlowSOM, flowStats, flowWorkspace, fmcsR, frma, FunciSNP, GA4GHclient, GA4GHshiny, gcapc, gCMAPWeb, genbankr, geneAttribution, geneClassifiers, GENESIS, GenomicAlignments, GenomicInteractions, GenomicTuples, genotypeeval, GenVisR, GGBase, GGtools, goseq, GOTHiC, gQTLBase, gQTLstats, GSVA, Gviz, gwascat, HDF5Array, heatmaps, hiReadsProcessor, hopach, HTSeqGenie, IHW, IHWpaper, IMAS, INSPEcT, intansv, InteractionSet, IntEREst, IONiseR, isomiRs, IVAS, JunctionSeq, KCsmart, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, LOLA, LVSmiRNA, M3D, MAST, matter, MEAL, metaMS, methInheritSim, MethylAid, methylPipe, methylumi, methyvim, mimager, MinimumDistance, MIRA, MiRaGE, mogsa, monocle, motifbreakR, msa, MultiAssayExperiment, MultiDataSet, multiMiR, MutationalPatterns, mzR, NarrowPeaks, ncdfFlow, npGSEA, nucleR, oligoClasses, openPrimeR, parglms, PathwaySplice, pbcmc, pcaMethods, pdInfoBuilder, phyloseq, piano, PING, plrs, podkat, prada, ProCoNA, profileScoreDist, pRoloc, PureCN, pwOmics, qsea, QuasR, R3CPET, R453Plus1Toolbox, RaggedExperiment, ramwas, RCAS, RCyjs, RCytoscape, recoup, REDseq, RefNet, REMP, ReportingTools, RGalaxy, RGSEA, RiboProfiling, Ringo, RJMCMCNucleosomes, rMAT, roar, rols, Rqc, rqubic, Rsamtools, rsbml, RTCGAToolbox, rtracklayer, SC3, scater, scmap, scPipe, scran, SGSeq, signeR, simpleaffy, SingleCellExperiment, SLGI, SNPhood, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, snpStats, splatter, spliceSites, SplicingGraphs, sscu, STAN, Streamer, SummarizedExperiment, systemPipeR, systemPipeRdata, TarSeqQC, TCseq, TFBSTools, transcriptR, TransView, triform, TSRchitect, TSSi, TVTB, unifiedWMWqPCR, uSORT, VariantTools, VariantToolsData, wavClusteR, xcms, XDE, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, XVector
Suggests Me acde, AIMS, ArrayTV, ASSET, BaalChIP, baySeq, bigmelon, bigmemoryExtras, BiocCheck, BiocInstaller, BiocParallel, BiocStyle, biocViews, BioMedR, biosigner, BiRewire, BLMA, CAFE, CAMERA, CancerSubtypes, CAnD, CausalR, ccrepe, CellNOptR, CexoR, ChIPanalyser, ChIPXpress, CHRONOS, CINdex, clipper, clonotypeR, clustComp, CNORfeeder, CNORfuzzy, CNVPanelizer, coexnet, coMET, ConnectivityMap, cosmiq, COSNet, cpvSNP, cydar, cytofkit, DAPAR, DBChIP, DEsubs, DMRcaller, DMRcate, ENCODExplorer, ENmix, epiNEM, EventPointer, fCCAC, FGNet, flowCL, flowQB, FlowRepositoryR, flowTime, focalCall, gCMAP, gCrisprTools, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, genomation, GEOquery, GMRP, GOstats, GraphPAC, GreyListChIP, grndata, GWASTools, h5vc, Harman, HarmanData, hiAnnotator, hierGWAS, hypergraph, iCARE, iClusterPlus, illuminaio, InPAS, INPower, IPO, kebabs, KEGGREST, ldblock, LINC, mAPKL, massiR, MatrixRider, MBttest, mdgsa, Mergeomics, MeSH.Aca.eg.db, MeSH.Aga.PEST.eg.db, MeSH.Ame.eg.db, MeSH.Aml.eg.db, MeSH.Ana.eg.db, MeSH.Ani.FGSC.eg.db, MeSH.AOR.db, MeSH.Ath.eg.db, MeSH.Bfl.eg.db, MeSH.Bsu.168.eg.db, MeSH.Bta.eg.db, MeSH.Cal.SC5314.eg.db, MeSH.Cbr.eg.db, MeSH.Cel.eg.db, MeSH.Cfa.eg.db, MeSH.Cin.eg.db, MeSH.Cja.eg.db, MeSH.Cpo.eg.db, MeSH.Cre.eg.db, MeSH.Dan.eg.db, MeSH.db, MeSH.Dda.3937.eg.db, MeSH.Ddi.AX4.eg.db, MeSH.Der.eg.db, MeSH.Dgr.eg.db, MeSH.Dme.eg.db, MeSH.Dmo.eg.db, MeSH.Dpe.eg.db, MeSH.Dre.eg.db, MeSH.Dse.eg.db, MeSH.Dsi.eg.db, MeSH.Dvi.eg.db, MeSH.Dya.eg.db, MeSH.Eco.55989.eg.db, MeSH.Eco.ED1a.eg.db, MeSH.Eco.IAI39.eg.db, MeSH.Eco.K12.MG1655.eg.db, MeSH.Eco.O157.H7.Sakai.eg.db, MeSH.Eco.UMN026.eg.db, MeSH.Eqc.eg.db, MeSH.Gga.eg.db, MeSH.Gma.eg.db, MeSH.Hsa.eg.db, MeSH.Laf.eg.db, MeSH.Lma.eg.db, MeSH.Mdo.eg.db, MeSH.Mes.eg.db, MeSH.Mga.eg.db, MeSH.Miy.eg.db, MeSH.Mml.eg.db, MeSH.Mmu.eg.db, MeSH.Mtr.eg.db, MeSH.Nle.eg.db, MeSH.Oan.eg.db, MeSH.Ocu.eg.db, MeSH.Oni.eg.db, MeSH.Osa.eg.db, MeSH.Pab.eg.db, MeSH.Pae.PAO1.eg.db, MeSH.PCR.db, MeSH.Pfa.3D7.eg.db, MeSH.Pto.eg.db, MeSH.Ptr.eg.db, MeSH.Rno.eg.db, MeSH.Sce.S288c.eg.db, MeSH.Sco.A32.eg.db, MeSH.Sil.eg.db, MeSH.Spo.972h.eg.db, MeSH.Spu.eg.db, MeSH.Ssc.eg.db, MeSH.Syn.eg.db, MeSH.Tbr.9274.eg.db, MeSH.Tgo.ME49.eg.db, MeSH.Tgu.eg.db, MeSH.Vvi.eg.db, MeSH.Xla.eg.db, MeSH.Xtr.eg.db, MeSH.Zma.eg.db, Metab, MetaboSignal, metagene, metagenomeSeq, metaseqR, MetCirc, methylInheritance, microbiome, microRNAome, MIGSAdata, miRBaseConverter, miRcomp, mirIntegrator, miRLAB, Mirsynergy, motifStack, MSnID, multiClust, MultiMed, multiOmicsViz, MWASTools, netbenchmark, netbiov, NetSAM, nondetects, nucleoSim, OncoScore, PAA, panelcn.mops, Path2PPI, PathNet, pathview, pepXMLTab, PGA, PhenStat, Prize, proBAMr, proFIA, proteoQC, qpgraph, quantro, QuartPAC, RBGL, rBiopaxParser, Rcade, rcellminer, rCGH, Rcpi, RCy3, RGraph2js, Rgraphviz, rgsepd, riboSeqR, ROntoTools, ropls, RTN, RTNduals, RTNsurvival, rTRM, samExploreR, sangerseqR, SANTA, sapFinder, segmentSeq, SeqArray, seqPattern, seqTools, SeqVarTools, SICtools, sigsquared, SIMAT, similaRpeak, SIMLR, SNPRelate, SpacePAC, sparseDOSSA, specL, STATegRa, STRINGdb, TCC, TIN, ToPASeq, trackViewer, transcriptogramer, traseR, TReNA, trena, TRONCO, Uniquorn
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Follow Installation instructions to use this package in your R session.

Source Package BiocGenerics_0.24.0.tar.gz
Windows Binary BiocGenerics_0.24.0.zip
Mac OS X 10.11 (El Capitan) BiocGenerics_0.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocGenerics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocGenerics
Package Short Url https://bioconductor.org/packages/BiocGenerics/
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Old Source Packages for BioC 3.6 Source Archive