SIMAT
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see SIMAT.
GC-SIM-MS data processing and alaysis tool
Bioconductor version: 3.6
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Author: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
Maintainer: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
citation("SIMAT")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SIMAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SIMAT")
SIMAT Usage | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | MassSpectrometry, Metabolomics, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | GPL-2 |
Depends | R (>= 3.4.0), Rcpp (>= 0.11.3) |
Imports | mzR, ggplot2, grid, reshape2 |
System Requirements | |
URL | http://omics.georgetown.edu/SIMAT.html |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SIMAT_1.10.0.tar.gz |
Windows Binary | SIMAT_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | SIMAT_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SIMAT |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SIMAT |
Package Short Url | https://bioconductor.org/packages/SIMAT/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |