proteoQC

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control


Bioconductor version: 3.6

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proteoQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
System Requirements
URL https://github.com/wenbostar/proteoQC
See More
Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proteoQC_1.14.0.tar.gz
Windows Binary proteoQC_1.14.0.zip
Mac OS X 10.11 (El Capitan) proteoQC_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/proteoQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteoQC
Package Short Url https://bioconductor.org/packages/proteoQC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive