FlowSOM
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see FlowSOM.
Using self-organizing maps for visualization and interpretation of cytometry data
Bioconductor version: 3.6
FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.
Author: Sofie Van Gassen, Britt Callebaut and Yvan Saeys
Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>
Citation (from within R, enter
citation("FlowSOM")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FlowSOM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSOM")
FlowSOM | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBasedAssays, CellBiology, Clustering, FlowCytometry, Software, Visualization |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | GPL (>= 2) |
Depends | R (>= 3.2), igraph |
Imports | flowCore, ConsensusClusterPlus, BiocGenerics, tsne, XML, flowUtils |
System Requirements | |
URL | http://www.r-project.org http://dambi.ugent.be |
See More
Suggests | BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | cytofkit, MetaCyto |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | FlowSOM_1.10.0.tar.gz |
Windows Binary | FlowSOM_1.10.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | FlowSOM_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/FlowSOM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSOM |
Package Short Url | https://bioconductor.org/packages/FlowSOM/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |