piano

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see piano.

Platform for integrative analysis of omics data


Bioconductor version: 3.6

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

Citation (from within R, enter citation("piano")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("piano")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")
Piano - Platform for Integrative Analysis of Omics data PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization
Version 1.18.1
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL (>=2)
Depends R (>= 2.14.0)
Imports BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea
System Requirements
URL http://www.sysbio.se/piano
Bug Reports https://github.com/varemo/piano/issues
See More
Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi
Linking To
Enhances
Depends On Me
Imports Me PharmacoGx
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package piano_1.18.1.tar.gz
Windows Binary piano_1.18.1.zip
Mac OS X 10.11 (El Capitan) piano_1.18.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/piano
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/piano
Package Short Url https://bioconductor.org/packages/piano/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive