multiOmicsViz

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see multiOmicsViz.

Plot the effect of one omics data on other omics data along the chromosome


Bioconductor version: 3.6

Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Citation (from within R, enter citation("multiOmicsViz")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("multiOmicsViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiOmicsViz")
multiOmicsViz PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, SystemsBiology, Visualization
Version 1.2.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License LGPL
Depends R (>= 3.3.2)
Imports methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiOmicsViz_1.2.0.tar.gz
Windows Binary multiOmicsViz_1.2.0.zip
Mac OS X 10.11 (El Capitan) multiOmicsViz_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiOmicsViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiOmicsViz
Package Short Url https://bioconductor.org/packages/multiOmicsViz/
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Old Source Packages for BioC 3.6 Source Archive