AIMS
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see AIMS.
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Bioconductor version: 3.6
This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.
Author: Eric R. Paquet, Michael T. Hallett
Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>
citation("AIMS")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AIMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AIMS")
AIMS An Introduction (HowTo) | R Script | |
Reference Manual | ||
README | Text |
Details
biocViews | Classification, GeneExpression, Microarray, RNASeq, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), e1071, Biobase |
Imports | |
System Requirements | |
URL | http://www.bci.mcgill.ca/AIMS |
See More
Suggests | breastCancerVDX, hgu133a.db, RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | genefu |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AIMS_1.10.0.tar.gz |
Windows Binary | AIMS_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | AIMS_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AIMS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AIMS |
Package Short Url | https://bioconductor.org/packages/AIMS/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |