xps 1.2.10
Christian Stratowa
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xps | | Last Changed Rev: 38744 / Revision: 38965 | | Last Changed Date: 2009-04-12 10:22:40 -0700 (Sun, 12 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | ERROR |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for file 'xps/DESCRIPTION' ... OK
* preparing 'xps':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'xps' ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch -
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c TStat.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c StatUtils.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSBase.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSUtils.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSSchemes.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSDataTypes.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSProjectHandler.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSData.cxx
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2465: warning: unused variable ‘fNMasked’
XPSData.cxx:2475: warning: unused variable ‘fNOutlier’
XPSData.cxx:2485: warning: unused variable ‘fNModified’
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSProcessing.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSHybridizer.cxx
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1721: warning: ‘pval’ may be used uninitialized in this function
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSSelector.cxx
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSNormalizer.cxx
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:230: warning: ‘his2all’ may be used uninitialized in this function
XPSNormalizer.cxx:231: warning: ‘his2sel’ may be used uninitialized in this function
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSPreProcessing.cxx
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2658: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3500: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5684: warning: unused variable ‘scheme_ptr_ptr’
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSNormation.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSFilter.cxx
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSAnalyzer.cxx
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c XPSAnalysis.cxx
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2174: warning: unused variable ‘option’
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c rwrapper.cxx
Generating dictionary xpsDict.cxx...
g++ -O2 -Wall -fPIC -pthread -m64 -I/usr/local/include/root -c xpsDict.cxx
g++ -shared -O2 -m64 TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lGui -pthread -lm -ldl -rdynamic -lRIO -lGed -lTreePlayer -lTreeViewer -o xps.so
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'xps'
Formats: text html latex example
AnalysisTreeSet-class text html latex example
CallTreeSet-class text html latex example
DataTreeSet-class text html latex example
ExprTreeSet-class text html latex example
Filter-class text html latex example
FilterTreeSet-class text html latex example
PreFilter-class text html latex example
PreFilter-constructor text html latex example
ProcesSet-class text html latex example
ProjectInfo-class text html latex example
ProjectInfo-constructor text html latex example
ROOT text html latex
SchemeTreeSet-class text html latex example
TreeSet-class text html latex example
UniFilter-class text html latex example
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cvFilter-methods text html latex example
dabg.call text html latex example
dfw text html latex example
diffFilter-methods text html latex example
existsROOTFile text html latex example
exonLevel text html latex example
export text html latex example
export.filter text html latex
export.root text html latex example
express text html latex example
exprs-methods text html latex example
farms text html latex example
fcFilter-methods text html latex example
gapFilter-methods text html latex example
getChipName text html latex example
getChipType text html latex example
getDatatype text html latex example
getNameType text html latex example
getNumberTrees text html latex example
getProbeInfo text html latex example
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getTreeNames text html latex example
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hist-methods text html latex example
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import.exon.scheme text html latex example
import.expr.scheme text html latex example
import.genome.scheme text html latex example
ini.call text html latex example
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isROOTFile text html latex example
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mas4 text html latex example
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normalize text html latex example
pm-methods text html latex example
pmplot-methods text html latex example
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presCall-methods text html latex example
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ratioFilter-methods text html latex example
rawCELName-methods text html latex example
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root.browser-methods text html latex
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root.graph1D text html latex example
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root.hist1D text html latex example
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root.image text html latex example
root.mvaplot text html latex example
root.profile text html latex example
root.scheme text html latex example
summarize text html latex example
type2Exten text html latex example
uniTest-methods text html latex example
unifilter text html latex example
unitestFilter-methods text html latex example
validData-methods text html latex
validTreetype text html latex example
varFilter-methods text html latex example
volcanoplot-methods text html latex
xps-package text html latex
xpsOptions text html latex
** building package indices ...
* DONE (xps)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'xps_1.2.10.tar.gz'