xps 1.2.10
Christian Stratowa
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xps | | Last Changed Rev: 38744 / Revision: 38965 | | Last Changed Date: 2009-04-12 10:22:40 -0700 (Sun, 12 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | ERROR |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/xps.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.2.10'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xps' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating xps-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating xps-manual.tex ... OK
* checking xps-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/xps.Rcheck
---------- Making package xps ------------
testing for presence of ROOT...
found root.exe of ROOT in directory C:/root/bin...OK
testing for presence of MSVC++...
found Visual C++ compiler in directory C:\Program Files\Microsoft Visual Studio 9.0\VC/bin...OK
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
running src/Makefile.win ...
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TMLMath.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
TMLMath.cxx
TMLMath.cxx(1109) : warning C4005: 'xmax' : macro redefinition
TMLMath.cxx(1060) : see previous definition of 'xmax'
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TStat.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
TStat.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c StatUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
StatUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSBase.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSBase.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSUtils.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSUtils.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSchemes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSSchemes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSDataTypes.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSDataTypes.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProjectHandler.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSProjectHandler.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSData.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSData.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSHybridizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSHybridizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSSelector.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSSelector.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormalizer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSNormalizer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSPreProcessing.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSPreProcessing.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSNormation.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSNormation.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSFilter.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSFilter.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalyzer.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSAnalyzer.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c XPSAnalysis.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
XPSAnalysis.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c rwrapper.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
rwrapper.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/cl" /I"C:/root/include" /FIw32pragma.h /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c xpsDict.cxx
Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 15.00.21022.08 for 80x86
Copyright (C) Microsoft Corporation. All rights reserved.
xpsDict.cxx
"C:\Program Files\Microsoft Visual Studio 9.0\VC\bin/link" /dll /def:xps.def /out:xps.dll fp10.obj -opt:noref -nologo -include:_G__cpp_setupG__Hist -include:_G__cpp_setupG__Graf -include:_G__cpp_setupG__G3D -include:_G__cpp_setupG__GPad -include:_G__cpp_setupG__Tree -include:_G__cpp_setupG__Rint -include:_G__cpp_setupG__PostScript -include:_G__cpp_setupG__Matrix -include:_G__cpp_setupG__Physics -include:_G__cpp_setupG__Ged "C:/root/lib/libCore.lib" "C:/root/lib/libCint.lib" "C:/root/lib/libHist.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGraf3d.lib" "C:/root/lib/libGpad.lib" "C:/root/lib/libTree.lib" "C:/root/lib/libRint.lib" "C:/root/lib/libPostscript.lib" "C:/root/lib/libMatrix.lib" "C:/root/lib/libPhysics.lib" "C:/root/lib/libNet.lib" "C:/root/lib/libRIO.lib" "C:/root/lib/libMathCore.lib" "C:/root/lib/libGui.lib" "C:/root/lib/libGraf.lib" "C:/root/lib/libGpad.lib" "C:/root/lib/libGed.lib" "C:/root/lib/libTreePlayer.lib" "C:/root/lib/libTreeViewer.lib" *.obj
Creating library xps.lib and object xps.exp
... done
installing DLL
installing R files
installing inst files
preparing package xps for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'xps'
Formats: text html latex example chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm
Compile time: 0 minutes, 1 second
104 Topics
1,132 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\xps.Rcheck\00_pkg_src\xps\chm\xps.chm, 161,880 bytes
Compression decreased file by 438,199 bytes.
adding MD5 sums
* DONE (xps)