xps 1.2.10
Christian Stratowa
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/xps | | Last Changed Rev: 38744 / Revision: 38965 | | Last Changed Date: 2009-04-12 10:22:40 -0700 (Sun, 12 Apr 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | ERROR |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/xps.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.2.10'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'xps/src' contains object files.
* checking whether package 'xps' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating xps-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating xps-manual.tex ... OK
* checking xps-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.3-bioc/meat/xps.Rcheck/00check.log
for details
* Installing *source* package 'xps' ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - i386
make: Nothing to be done for `all'.
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'xps'
Formats: text html latex example
AnalysisTreeSet-class text html latex example
CallTreeSet-class text html latex example
DataTreeSet-class text html latex example
ExprTreeSet-class text html latex example
Filter-class text html latex example
FilterTreeSet-class text html latex example
PreFilter-class text html latex example
PreFilter-constructor text html latex example
ProcesSet-class text html latex example
ProjectInfo-class text html latex example
ProjectInfo-constructor text html latex example
ROOT text html latex
SchemeTreeSet-class text html latex example
TreeSet-class text html latex example
UniFilter-class text html latex example
UniFilter-constructor text html latex example
addData-methods text html latex example
attachBgrd-methods text html latex
attachCall-methods text html latex example
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attachMask-methods text html latex example
bgcorrect text html latex example
boxplot-methods text html latex example
boxplot.dev text html latex
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callplot-methods text html latex
cvFilter-methods text html latex example
dabg.call text html latex example
dfw text html latex example
diffFilter-methods text html latex example
existsROOTFile text html latex example
exonLevel text html latex example
export text html latex example
export.filter text html latex
export.root text html latex example
express text html latex example
exprs-methods text html latex example
farms text html latex example
fcFilter-methods text html latex example
gapFilter-methods text html latex example
getChipName text html latex example
getChipType text html latex example
getDatatype text html latex example
getNameType text html latex example
getNumberTrees text html latex example
getProbeInfo text html latex example
getTreeData-methods text html latex
getTreeNames text html latex example
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hist-methods text html latex example
image-methods text html latex
image.dev text html latex example
import.data text html latex example
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import.expr.scheme text html latex example
import.genome.scheme text html latex example
ini.call text html latex example
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lowFilter-methods text html latex example
madFilter-methods text html latex example
mas4 text html latex example
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mas5.call text html latex example
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rma text html latex example
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root.call text html latex example
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root.density text html latex example
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root.graph1D text html latex example
root.graph2D text html latex example
root.hist1D text html latex example
root.hist2D text html latex example
root.hist3D text html latex example
root.image text html latex example
root.mvaplot text html latex example
root.profile text html latex example
root.scheme text html latex example
summarize text html latex example
type2Exten text html latex example
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unifilter text html latex example
unitestFilter-methods text html latex example
validData-methods text html latex
validTreetype text html latex example
varFilter-methods text html latex example
volcanoplot-methods text html latex
xps-package text html latex
xpsOptions text html latex
** building package indices ...
* DONE (xps)