oligoClasses 1.4.0
Benilton Carvalho
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/oligoClasses | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/oligoClasses.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'oligoClasses/DESCRIPTION' ... OK
* this is package 'oligoClasses' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligoClasses' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating oligoClasses-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating oligoClasses-manual.tex ... OK
* checking oligoClasses-manual.tex using pdflatex ... OK
* Installing *source* package 'oligoClasses' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'oligoClasses'
Formats: text html latex example
Note: removing empty section \seealso in file 'AffyGenePDInfo-class.Rd'
AffyGenePDInfo-class text html latex example
Note: removing empty section \author in file 'DBPDInfo-class.Rd'
Note: removing empty section \note in file 'DBPDInfo-class.Rd'
Note: removing empty section \references in file 'DBPDInfo-class.Rd'
Note: removing empty section \seealso in file 'DBPDInfo-class.Rd'
DBPDInfo-class text html latex example
Note: removing empty section \note in file 'FeatureSet-class.Rd'
Note: removing empty section \references in file 'FeatureSet-class.Rd'
FeatureSet-class text html latex
Note: removing empty section \note in file 'FeatureSetExtensions-class.Rd'
Note: removing empty section \references in file 'FeatureSetExtensions-class.Rd'
FeatureSetExtensions-class text html latex example
Note: removing empty section \seealso in file 'GeneSTFeatureSet-class.Rd'
GeneSTFeatureSet-class text html latex example
Note: removing empty section \author in file 'PDInfo-class.Rd'
Note: removing empty section \note in file 'PDInfo-class.Rd'
Note: removing empty section \references in file 'PDInfo-class.Rd'
Note: removing empty section \seealso in file 'PDInfo-class.Rd'
Note: removing empty section \section{Objects from the Class} in file 'PDInfo-class.Rd'
PDInfo-class text html latex example
QuantificationSet-class text html latex example
Note: removing empty section \author in file 'SnpCallSet-methods.Rd'
Note: removing empty section \details in file 'SnpCallSet-methods.Rd'
Note: removing empty section \note in file 'SnpCallSet-methods.Rd'
Note: removing empty section \references in file 'SnpCallSet-methods.Rd'
Note: removing empty section \examples in file 'SnpCallSet-methods.Rd'
SnpCallSet-methods text html latex
SnpCallSetPlus-class text html latex example
SnpCnvFeatureSet-class text html latex example
SnpCnvQSet-class text html latex example
Note: removing empty section \author in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \details in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \note in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \references in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \examples in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \seealso in file 'SnpCopyNumberSet-methods.Rd'
SnpCopyNumberSet-methods text html latex
SnpLevelSet-class text html latex example
Note: removing empty section \author in file 'SnpQSet-class.Rd'
Note: removing empty section \note in file 'SnpQSet-class.Rd'
Note: removing empty section \references in file 'SnpQSet-class.Rd'
SnpQSet-class text html latex example
Note: removing empty section \author in file 'SnpSetExtensions-class.Rd'
Note: removing empty section \note in file 'SnpSetExtensions-class.Rd'
Note: removing empty section \references in file 'SnpSetExtensions-class.Rd'
SnpSetExtensions-class text html latex example
TilingQSet-class text html latex example
affyPlatforms text html latex example
calculateCopyNumber text html latex
chromosome text html latex
db text html latex example
oligoSnpSet-methods text html latex
Note: removing empty section \author in file 'platformDesign-class.Rd'
Note: removing empty section \note in file 'platformDesign-class.Rd'
Note: removing empty section \references in file 'platformDesign-class.Rd'
Note: removing empty section \seealso in file 'platformDesign-class.Rd'
platformDesign-class text html latex example
position text html latex
** building package indices ...
* DONE (oligoClasses)