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Package 191/294HostnameOS / ArchBUILDCHECKBUILD BIN
oligoClasses 1.4.0
Benilton Carvalho
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/oligoClasses
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: oligoClasses
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes oligoClasses_1.4.0.tar.gz
StartedAt: 2009-04-18 17:30:34 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:31:15 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 41.0 seconds
RetCode: 0
Status: OK
CheckDir: oligoClasses.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/oligoClasses.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'oligoClasses/DESCRIPTION' ... OK
* this is package 'oligoClasses' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oligoClasses' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating oligoClasses-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating oligoClasses-manual.tex ... OK
* checking oligoClasses-manual.tex using pdflatex ... OK

oligoClasses.Rcheck/00install.out:

* Installing *source* package 'oligoClasses' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'oligoClasses'
     Formats: text html latex example 
Note: removing empty section \seealso in file 'AffyGenePDInfo-class.Rd'
  AffyGenePDInfo-class              text    html    latex   example
Note: removing empty section \author in file 'DBPDInfo-class.Rd'
Note: removing empty section \note in file 'DBPDInfo-class.Rd'
Note: removing empty section \references in file 'DBPDInfo-class.Rd'
Note: removing empty section \seealso in file 'DBPDInfo-class.Rd'
  DBPDInfo-class                    text    html    latex   example
Note: removing empty section \note in file 'FeatureSet-class.Rd'
Note: removing empty section \references in file 'FeatureSet-class.Rd'
  FeatureSet-class                  text    html    latex
Note: removing empty section \note in file 'FeatureSetExtensions-class.Rd'
Note: removing empty section \references in file 'FeatureSetExtensions-class.Rd'
  FeatureSetExtensions-class        text    html    latex   example
Note: removing empty section \seealso in file 'GeneSTFeatureSet-class.Rd'
  GeneSTFeatureSet-class            text    html    latex   example
Note: removing empty section \author in file 'PDInfo-class.Rd'
Note: removing empty section \note in file 'PDInfo-class.Rd'
Note: removing empty section \references in file 'PDInfo-class.Rd'
Note: removing empty section \seealso in file 'PDInfo-class.Rd'
Note: removing empty section \section{Objects from the Class} in file 'PDInfo-class.Rd'
  PDInfo-class                      text    html    latex   example
  QuantificationSet-class           text    html    latex   example
Note: removing empty section \author in file 'SnpCallSet-methods.Rd'
Note: removing empty section \details in file 'SnpCallSet-methods.Rd'
Note: removing empty section \note in file 'SnpCallSet-methods.Rd'
Note: removing empty section \references in file 'SnpCallSet-methods.Rd'
Note: removing empty section \examples in file 'SnpCallSet-methods.Rd'
  SnpCallSet-methods                text    html    latex
  SnpCallSetPlus-class              text    html    latex   example
  SnpCnvFeatureSet-class            text    html    latex   example
  SnpCnvQSet-class                  text    html    latex   example
Note: removing empty section \author in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \details in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \note in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \references in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \examples in file 'SnpCopyNumberSet-methods.Rd'
Note: removing empty section \seealso in file 'SnpCopyNumberSet-methods.Rd'
  SnpCopyNumberSet-methods          text    html    latex
  SnpLevelSet-class                 text    html    latex   example
Note: removing empty section \author in file 'SnpQSet-class.Rd'
Note: removing empty section \note in file 'SnpQSet-class.Rd'
Note: removing empty section \references in file 'SnpQSet-class.Rd'
  SnpQSet-class                     text    html    latex   example
Note: removing empty section \author in file 'SnpSetExtensions-class.Rd'
Note: removing empty section \note in file 'SnpSetExtensions-class.Rd'
Note: removing empty section \references in file 'SnpSetExtensions-class.Rd'
  SnpSetExtensions-class            text    html    latex   example
  TilingQSet-class                  text    html    latex   example
  affyPlatforms                     text    html    latex   example
  calculateCopyNumber               text    html    latex
  chromosome                        text    html    latex
  db                                text    html    latex   example
  oligoSnpSet-methods               text    html    latex
Note: removing empty section \author in file 'platformDesign-class.Rd'
Note: removing empty section \note in file 'platformDesign-class.Rd'
Note: removing empty section \references in file 'platformDesign-class.Rd'
Note: removing empty section \seealso in file 'platformDesign-class.Rd'
  platformDesign-class              text    html    latex   example
  position                          text    html    latex
** building package indices ...
* DONE (oligoClasses)