SingleCellExperiment
This is the development version of SingleCellExperiment; for the stable release version, see SingleCellExperiment.
S4 Classes for Single Cell Data
Bioconductor version: Development (3.23)
Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
Author: Aaron Lun [aut, cph], Davide Risso [aut, cre, cph], Keegan Korthauer [ctb], Kevin Rue-Albrecht [ctb], Luke Zappia [ctb] (ORCID:
, github: lazappi)
Maintainer: Davide Risso <risso.davide at gmail.com>
citation("SingleCellExperiment")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SingleCellExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software |
| Version | 1.33.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | GPL-3 |
| Depends | SummarizedExperiment |
| Imports | methods, utils, stats, S4Vectors, BiocGenerics, GenomicRanges, DelayedArray |
| System Requirements | |
| URL |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq(>= 2.9.1), Rtsne |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SingleCellExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SingleCellExperiment |
| Package Short Url | https://bioconductor.org/packages/SingleCellExperiment/ |
| Package Downloads Report | Download Stats |