MOSim
This is the development version of MOSim; for the stable release version, see MOSim.
Multi-Omics Simulation (MOSim)
Bioconductor version: Development (3.23)
MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
Author: Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]
Maintainer: Sonia Tarazona <sotacam at gmail.com>
Citation (from within R, enter
citation("MOSim")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExperimentalDesign, RNASeq, Software, TimeCourse |
| Version | 2.7.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | HiddenMarkov, zoo, IRanges, S4Vectors, dplyr, ggplot2, lazyeval, matrixStats, methods, rlang, stringi, stringr, scran, Seurat, Signac, edgeR, Rcpp |
| System Requirements | |
| URL | https://github.com/ConesaLab/MOSim |
| Bug Reports | https://github.com/ConesaLab/MOSim/issues |
See More
| Suggests | testthat, knitr, rmarkdown, codetools, BiocStyle, stats, utils, purrr, scales, tibble, tidyr, Biobase, scater, SingleCellExperiment, decor, markdown, Rsamtools, igraph, leiden, bluster |
| Linking To | cpp11, Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOSim |
| Package Short Url | https://bioconductor.org/packages/MOSim/ |
| Package Downloads Report | Download Stats |