scds
This is the development version of scds; for the stable release version, see scds.
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
Bioconductor version: Development (3.23)
In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.
Author: Dennis Kostka [aut, cre], Bais Abha [aut]
Maintainer: Dennis Kostka <kostka at pitt.edu>
Citation (from within R, enter
citation("scds")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scds")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, GeneExpression, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics |
| Version | 1.27.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | Matrix, S4Vectors, SingleCellExperiment, SummarizedExperiment, xgboost, methods, stats, dplyr, pROC |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rsvd, Rtsne, scater, cowplot, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scds |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scds |
| Package Short Url | https://bioconductor.org/packages/scds/ |
| Package Downloads Report | Download Stats |