Multiple platform build/check report for BioC 3.21 - BUILD results for trigger on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4756
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4475
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4435
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4390
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4383
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for trigger on lconway

To the developers/maintainers of the trigger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: trigger

Version: 1.53.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data trigger

StartedAt: 2025-01-03 18:36:12 -0500 (Fri, 03 Jan 2025)

EndedAt: 2025-01-03 18:36:14 -0500 (Fri, 03 Jan 2025)

EllapsedTime: 2.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data trigger
###
##############################################################################
##############################################################################


* checking for file ‘trigger/DESCRIPTION’ ... OK
* preparing ‘trigger’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘trigger’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c trigger.c -o trigger.o
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
int i1,i2,i3,n1,n2,n3;
                   ^
trigger.c:54:8: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
   p = Calloc(*n, double*);
       ^
trigger.c:54:19: error: expected expression
   p = Calloc(*n, double*);
                  ^
trigger.c:60:4: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
   Free(p);
   ^
trigger.c:60:4: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
trigger.c:89:6: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
ll = Calloc(*ng, int);
     ^
trigger.c:89:18: error: expected expression
ll = Calloc(*ng, int);
                 ^
trigger.c:90:18: error: expected expression
mx = Calloc(*ng, double);
                 ^
trigger.c:91:18: error: expected expression
mc = Calloc(*ng, double);
                 ^
trigger.c:92:18: error: expected expression
xc = Calloc(*ng, double);
                 ^
trigger.c:93:18: error: expected expression
xx = Calloc(*ng, double);
                 ^
trigger.c:94:18: error: expected expression
cc = Calloc(*ng, double);
                 ^
trigger.c:146:1: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(ll); Free(mx); Free(mc); Free(xc); Free(xx); Free(cc);
^
trigger.c:160:6: error: implicit declaration of function 'Calloc' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
ll = Calloc(*ng, int);
     ^
trigger.c:160:18: error: expected expression
ll = Calloc(*ng, int);
                 ^
trigger.c:161:18: error: expected expression
mx = Calloc(*ng, double);
                 ^
trigger.c:162:18: error: expected expression
mc = Calloc(*ng, double);
                 ^
trigger.c:163:18: error: expected expression
xc = Calloc(*ng, double);
                 ^
trigger.c:164:18: error: expected expression
xx = Calloc(*ng, double);
                 ^
trigger.c:165:18: error: expected expression
cc = Calloc(*ng, double);
                 ^
trigger.c:224:1: error: implicit declaration of function 'Free' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
Free(ll); Free(mx); Free(mc); Free(xc); Free(xx); Free(cc);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
1 warning and 20 errors generated.
make: *** [trigger.o] Error 1
ERROR: compilation failed for package ‘trigger’
* removing ‘/private/tmp/RtmpAV3pJa/Rinstdee3160b2730/trigger’
      -----------------------------------
ERROR: package installation failed