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This page was generated on 2025-01-04 11:46 -0500 (Sat, 04 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4756
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4475
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4435
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4390
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4383
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2182/2275HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trigger 1.53.0  (landing page)
John D. Storey
Snapshot Date: 2025-01-03 13:40 -0500 (Fri, 03 Jan 2025)
git_url: https://git.bioconductor.org/packages/trigger
git_branch: devel
git_last_commit: 4da3165
git_last_commit_date: 2024-10-29 09:39:29 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

INSTALL results for trigger on kjohnson3

To the developers/maintainers of the trigger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: trigger
Version: 1.53.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL trigger
StartedAt: 2025-01-03 15:22:03 -0500 (Fri, 03 Jan 2025)
EndedAt: 2025-01-03 15:22:04 -0500 (Fri, 03 Jan 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL trigger
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘trigger’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c trigger.c -o trigger.o
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
int i1,i2,i3,n1,n2,n3;
                   ^
trigger.c:54:8: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   p = Calloc(*n, double*);
       ^
trigger.c:54:19: error: expected expression
   p = Calloc(*n, double*);
                  ^
trigger.c:60:4: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   Free(p);
   ^
trigger.c:60:4: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void     free(void *);
         ^
trigger.c:89:6: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
ll = Calloc(*ng, int);
     ^
trigger.c:89:18: error: expected expression
ll = Calloc(*ng, int);
                 ^
trigger.c:90:18: error: expected expression
mx = Calloc(*ng, double);
                 ^
trigger.c:91:18: error: expected expression
mc = Calloc(*ng, double);
                 ^
trigger.c:92:18: error: expected expression
xc = Calloc(*ng, double);
                 ^
trigger.c:93:18: error: expected expression
xx = Calloc(*ng, double);
                 ^
trigger.c:94:18: error: expected expression
cc = Calloc(*ng, double);
                 ^
trigger.c:146:1: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Free(ll); Free(mx); Free(mc); Free(xc); Free(xx); Free(cc);
^
trigger.c:160:6: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
ll = Calloc(*ng, int);
     ^
trigger.c:160:18: error: expected expression
ll = Calloc(*ng, int);
                 ^
trigger.c:161:18: error: expected expression
mx = Calloc(*ng, double);
                 ^
trigger.c:162:18: error: expected expression
mc = Calloc(*ng, double);
                 ^
trigger.c:163:18: error: expected expression
xc = Calloc(*ng, double);
                 ^
trigger.c:164:18: error: expected expression
xx = Calloc(*ng, double);
                 ^
trigger.c:165:18: error: expected expression
cc = Calloc(*ng, double);
                 ^
trigger.c:224:1: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Free(ll); Free(mx); Free(mc); Free(xc); Free(xx); Free(cc);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
1 warning and 20 errors generated.
make: *** [trigger.o] Error 1
ERROR: compilation failed for package ‘trigger’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/trigger’