Daniel Gatti
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DOQTL |
| Branch: RELEASE_3_6 |
| Last Commit: 716c597 |
| Last Changed Date: 2017-10-30 12:40:17 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:38:52 -0400 (Thu, 12 Apr 2018).
| Package 384/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DOQTL 1.14.0 Daniel Gatti
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | [ OK ] | |
| Package: DOQTL |
| Version: 1.14.0 |
| Command: rm -rf DOQTL.buildbin-libdir && mkdir DOQTL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DOQTL_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DOQTL.buildbin-libdir |
| StartedAt: 2018-04-12 11:23:43 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 11:24:22 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 39.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DOQTL_1.14.0.tgz |
| PackageFileSize: 3.997 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DOQTL.buildbin-libdir && mkdir DOQTL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DOQTL_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DOQTL.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DOQTL.buildbin-libdir DOQTL_1.14.0.tar.gz' >>>>>>> * installing *source* package ‘DOQTL’ ... ** libs clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c DOrec.c -o DOrec.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c DOstep.c -o DOstep.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c DOstep_Rwrappers.c -o DOstep_Rwrappers.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c addlog.c -o addlog.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c emission_prob.c -o emission_prob.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c emission_prob2.c -o emission_prob2.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c filter.smooth.allele.c -o filter.smooth.allele.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c filter.smooth.intensity.c -o filter.smooth.intensity.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c kinship.c -o kinship.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ri4hap.c -o ri4hap.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c transition.c -o transition.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c update.alleles.c -o update.alleles.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c update.c -o update.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c viterbi.c -o viterbi.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DOQTL.so DOrec.o DOstep.o DOstep_Rwrappers.o addlog.o emission_prob.o emission_prob2.o filter.smooth.allele.o filter.smooth.intensity.o init.o kinship.o ri4hap.o transition.o update.alleles.o update.o viterbi.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/DOQTL.buildbin-libdir/DOQTL/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DOQTL) >>>>>>> >>>>>>> FIXING LINKS FOR DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "DOQTL.buildbin-libdir/DOQTL/libs//DOQTL.so"