Daniel Gatti
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DOQTL |
| Branch: RELEASE_3_6 |
| Last Commit: 716c597 |
| Last Changed Date: 2017-10-30 12:40:17 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:24:28 -0400 (Thu, 12 Apr 2018).
| Package 384/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DOQTL 1.14.0 Daniel Gatti
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| Package: DOQTL |
| Version: 1.14.0 |
| Command: cd DOQTL.buildbin-libdir/DOQTL && zip -r ../../DOQTL_1.14.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:35:23 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:36:00 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 37.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DOQTL_1.14.0.zip |
| PackageFileSize: 8.284 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd DOQTL.buildbin-libdir/DOQTL && zip -r ../../DOQTL_1.14.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 48%) adding: data/ (372 bytes security) (stored 0%) adding: data/datalist (332 bytes security) (deflated 39%) adding: data/Rdata.rdb (332 bytes security) (deflated 2%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 41%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: doc/QTL_Mapping_DO_Mice.pdf (332 bytes security) (deflated 5%) adding: doc/QTL_Mapping_DO_Mice.R (332 bytes security) (deflated 81%) adding: doc/QTL_Mapping_DO_Mice.Rnw (332 bytes security) (deflated 65%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 72%) adding: help/DOQTL.rdb (332 bytes security) (deflated 3%) adding: help/DOQTL.rdx (332 bytes security) (deflated 1%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 81%) adding: html/add.missing.F1s.html (332 bytes security) (deflated 51%) adding: html/add.sig.thr.html (332 bytes security) (deflated 58%) adding: html/add.slash.html (332 bytes security) (deflated 50%) adding: html/addLog.html (332 bytes security) (deflated 55%) adding: html/addLogVector.html (332 bytes security) (deflated 53%) adding: html/assoc.map.html (332 bytes security) (deflated 59%) adding: html/assoc.plot.html (332 bytes security) (deflated 59%) adding: html/assoc.scan1.html (332 bytes security) (deflated 42%) adding: html/assoc.scan2.html (332 bytes security) (deflated 42%) adding: html/bayesint.html (332 bytes security) (deflated 53%) adding: html/calc.genoprob.alleles.html (332 bytes security) (deflated 61%) adding: html/calc.genoprob.html (332 bytes security) (deflated 72%) adding: html/calc.genoprob.intensity.html (332 bytes security) (deflated 65%) adding: html/categorize.variants.html (332 bytes security) (deflated 61%) adding: html/cc.trans.probs.html (332 bytes security) (deflated 54%) adding: html/cluster.strains.html (332 bytes security) (deflated 55%) adding: html/coef.doqtl.html (332 bytes security) (deflated 53%) adding: html/coefplot.html (332 bytes security) (deflated 59%) adding: html/colSumsLog.html (332 bytes security) (deflated 52%) adding: html/condense.model.probs.html (332 bytes security) (deflated 59%) adding: html/condense.sanger.snps.html (332 bytes security) (deflated 59%) adding: html/convert.allele.calls.html (332 bytes security) (deflated 49%) adding: html/convert.genes.to.GRanges.html (332 bytes security) (deflated 51%) adding: html/convert.genotypes.html (332 bytes security) (deflated 52%) adding: html/convert.variants.to.GRanges.html (332 bytes security) (deflated 51%) adding: html/convert.variants.to.numeric.html (332 bytes security) (deflated 51%) adding: html/create.genotype.states.html (332 bytes security) (deflated 54%) adding: html/create.Rdata.files.html (332 bytes security) (deflated 52%) adding: html/do.colors.html (332 bytes security) (deflated 55%) adding: html/do.states.html (332 bytes security) (deflated 52%) adding: html/do.trans.probs.html (332 bytes security) (deflated 57%) adding: html/do2sanger.html (332 bytes security) (deflated 52%) adding: html/emission.probs.allele.html (332 bytes security) (deflated 64%) adding: html/estimate.cluster.params.html (332 bytes security) (deflated 65%) adding: html/example.genes.html (332 bytes security) (deflated 43%) adding: html/example.pheno.html (332 bytes security) (deflated 55%) adding: html/example.qtl.html (332 bytes security) (deflated 55%) adding: html/example.snps.html (332 bytes security) (deflated 44%) adding: html/extract.raw.data.html (332 bytes security) (deflated 60%) adding: html/fast.qtlrel.html (332 bytes security) (deflated 63%) adding: html/fill.in.snps.html (332 bytes security) (deflated 53%) adding: html/filter.geno.probs.html (332 bytes security) (deflated 54%) adding: html/filter.samples.html (332 bytes security) (deflated 54%) adding: html/find.overlapping.genes.html (332 bytes security) (deflated 54%) adding: html/gene.plot.html (332 bytes security) (deflated 58%) adding: html/generic.trans.probs.html (332 bytes security) (deflated 57%) adding: html/genome.plots.html (332 bytes security) (deflated 61%) adding: html/genome.summary.plots.html (332 bytes security) (deflated 56%) adding: html/get.chr.lengths.html (332 bytes security) (deflated 48%) adding: html/get.do.states.html (332 bytes security) (deflated 49%) adding: html/get.gene.name.html (332 bytes security) (deflated 54%) adding: html/get.machine.precision.html (332 bytes security) (deflated 48%) adding: html/get.max.geno.html (332 bytes security) (deflated 51%) adding: html/get.mgi.features.html (332 bytes security) (deflated 62%) adding: html/get.num.auto.html (332 bytes security) (deflated 49%) adding: html/get.pattern.variants.html (332 bytes security) (deflated 54%) adding: html/get.pgw.html (332 bytes security) (deflated 53%) adding: html/get.sig.thr.html (332 bytes security) (deflated 52%) adding: html/get.strains.html (332 bytes security) (deflated 47%) adding: html/get.trans.probs.html (332 bytes security) (deflated 56%) adding: html/get.variants.html (332 bytes security) (deflated 59%) adding: html/hmm.html (332 bytes security) (deflated 70%) adding: html/html.report.html (332 bytes security) (deflated 55%) adding: html/impute.genotypes.html (332 bytes security) (deflated 57%) adding: html/intensity.plots.html (332 bytes security) (deflated 65%) adding: html/internal_functions.html (332 bytes security) (deflated 42%) adding: html/interpolate.markers.html (332 bytes security) (deflated 55%) adding: html/kinship.html (332 bytes security) (deflated 56%) adding: html/muga.snps.to.keep.html (332 bytes security) (deflated 48%) adding: html/normalize.batches.html (332 bytes security) (deflated 63%) adding: html/parameter.update.html (332 bytes security) (deflated 62%) adding: html/plot.doqtl.html (332 bytes security) (deflated 52%) adding: html/pxg.plot.html (332 bytes security) (deflated 60%) adding: html/qtl.heatmap.html (332 bytes security) (deflated 51%) adding: html/qtl.LRS.html (332 bytes security) (deflated 58%) adding: html/qtl.qtlrel.html (332 bytes security) (deflated 60%) adding: html/qtl.simulate.html (332 bytes security) (deflated 61%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/rankZ.html (332 bytes security) (deflated 47%) adding: html/read.vcf.html (332 bytes security) (deflated 61%) adding: html/scanone.assoc.html (332 bytes security) (deflated 60%) adding: html/scanone.eqtl.html (332 bytes security) (deflated 58%) adding: html/scanone.html (332 bytes security) (deflated 62%) adding: html/scanone.perm.html (332 bytes security) (deflated 63%) adding: html/sdp.plot.html (332 bytes security) (deflated 54%) adding: html/sex.predict.html (332 bytes security) (deflated 54%) adding: html/snp.plot.html (332 bytes security) (deflated 61%) adding: html/summarize.genotype.transitions.html (332 bytes security) (deflated 57%) adding: html/update_from_r.html (332 bytes security) (deflated 40%) adding: html/variant.plot.html (332 bytes security) (deflated 63%) adding: html/write.founder.genomes.html (332 bytes security) (deflated 54%) adding: html/write.results.html (332 bytes security) (deflated 40%) adding: INDEX (332 bytes security) (deflated 68%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/DOQTL.dll (332 bytes security) (deflated 57%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/DOQTL.dll (332 bytes security) (deflated 57%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 66%) adding: NEWS.Rd (332 bytes security) (deflated 66%) adding: R/ (372 bytes security) (stored 0%) adding: R/DOQTL (332 bytes security) (deflated 41%) adding: R/DOQTL.rdb (332 bytes security) (deflated 0%) adding: R/DOQTL.rdx (332 bytes security) (stored 0%) adding: R/sysdata.rdb (332 bytes security) (deflated 0%) adding: R/sysdata.rdx (332 bytes security) (stored 0%) adding: tutorial/ (372 bytes security) (stored 0%) adding: tutorial/Genotyping_DO_Mice.pdf (332 bytes security) (deflated 13%) adding: tutorial/Genotyping_DO_Mice.Rnw (332 bytes security) (deflated 69%) adding: tutorial/Reading_MUGA_Data.pdf (332 bytes security) (deflated 7%) adding: tutorial/Reading_MUGA_Data.Rnw (332 bytes security) (deflated 60%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_assoc.R (332 bytes security) (deflated 54%) adding: unitTests/test_qtl.R (332 bytes security) (deflated 83%)