Back to Long Tests report for BioC 3.21

This page was generated on 2025-02-01 23:55 -0500 (Sat, 01 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4704
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4467
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4478
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-02-01 09:55 -0500 (Sat, 01 Feb 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 4a3f8f2
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
StartedAt: 2025-02-01 16:01:04 -0500 (Sat, 01 Feb 2025)
EndedAt: 2025-02-01 16:02:57 -0500 (Sat, 01 Feb 2025)
EllapsedTime: 112.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-02-01 16:01:45.849][biodb::testContext]
biodb.INFO [2025-02-01 16:01:45.852][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:01:45.852][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-02-01 16:01:45.853][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:01:45.854][biodb::testContext]
biodb.INFO [2025-02-01 16:01:45.858][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:01:45.860][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-01 16:01:45.865][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:45.865][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-01 16:01:45.866][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.869][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-01 16:01:45.882][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.884][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-01 16:01:45.885][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.888][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-01 16:01:45.888][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-01 16:01:45.889][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-01 16:01:45.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.892][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-01 16:01:45.892][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-01 16:01:45.893][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.896][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-01 16:01:45.897][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-01 16:01:45.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.899][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-01 16:01:45.900][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-01 16:01:45.901][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-01 16:01:45.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.903][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-01 16:01:45.904][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.906][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-01 16:01:45.907][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-01 16:01:45.908][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-01 16:01:45.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.910][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:01:45.911][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-01 16:01:45.912][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-01 16:01:45.913][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-01 16:01:45.913][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-01 16:01:45.914][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-01 16:01:45.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.917][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-01 16:01:45.918][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-01 16:01:45.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.920][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-01 16:01:45.921][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-01 16:01:45.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.923][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-01 16:01:45.924][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-01 16:01:45.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.927][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-01 16:01:45.928][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-01 16:01:45.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.930][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-01 16:01:45.931][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-01 16:01:45.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.934][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:01:45.935][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-01 16:01:45.950][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-01 16:01:45.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.953][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-01 16:01:45.954][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-01 16:01:45.954][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-01 16:01:45.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:45.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:45.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:45.959][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-01 16:01:45.987][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:45.998][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-01 16:01:45.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:45.999][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.000][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.001][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.001][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.002][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.003][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:01:46.004][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.004][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.005][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-01 16:01:46.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.006][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.007][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.008][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:46.008][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:46.008][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:46.008][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:01:46.008][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:01:46.009][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:46.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.011][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.011][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.012][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.013][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.015][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.016][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.017][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-01 16:01:46.018][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.019][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:01:46.020][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.022][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.023][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.024][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:01:46.025][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.025][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.026][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-01 16:01:46.027][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.028][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.028][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.029][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:46.029][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:46.029][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:46.029][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:01:46.029][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:01:46.030][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:46.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.031][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.032][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.033][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.034][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.035][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.035][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.036][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.037][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.037][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.038][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-01 16:01:46.039][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.040][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-01 16:01:46.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.042][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.042][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.043][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.044][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.044][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.045][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:01:46.046][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.047][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.047][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-01 16:01:46.048][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.049][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.049][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.050][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.051][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:46.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.052][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.053][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.056][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.056][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.057][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.058][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.058][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.059][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-01 16:01:46.061][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.061][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:01:46.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.063][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.063][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.064][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.065][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.066][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.066][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:01:46.067][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.068][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.068][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-01 16:01:46.069][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.070][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.071][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.071][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.072][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:46.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.074][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.075][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.076][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.077][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.077][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.079][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.080][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.082][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:46.083][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.141][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-01 16:01:46.144][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-01 16:01:46.145][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-01 16:01:46.146][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-01 16:01:46.147][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-01 16:01:46.148][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-01 16:01:46.149][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-01 16:01:46.150][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-01 16:01:46.151][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-01 16:01:46.152][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-01 16:01:46.153][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-01 16:01:46.154][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-01 16:01:46.155][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-01 16:01:46.156][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-01 16:01:46.157][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:01:46.158][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:01:46.159][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-01 16:01:46.160][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-01 16:01:46.161][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-01 16:01:46.162][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-01 16:01:46.163][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-01 16:01:46.164][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-01 16:01:46.165][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-01 16:01:46.166][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-01 16:01:46.167][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-01 16:01:46.168][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-01 16:01:46.169][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-01 16:01:46.170][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-01 16:01:46.171][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-01 16:01:46.172][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-01 16:01:46.173][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-01 16:01:46.174][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-01 16:01:46.175][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-01 16:01:46.176][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-01 16:01:46.177][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-01 16:01:46.178][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-01 16:01:46.179][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-01 16:01:46.180][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-01 16:01:46.181][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-01 16:01:46.182][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-01 16:01:46.183][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-01 16:01:46.184][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-01 16:01:46.185][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-01 16:01:46.186][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-01 16:01:46.187][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-01 16:01:46.188][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:01:46.189][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-01 16:01:46.190][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-01 16:01:46.191][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-01 16:01:46.192][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-01 16:01:46.193][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-01 16:01:46.194][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-01 16:01:46.195][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-01 16:01:46.196][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-01 16:01:46.197][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-01 16:01:46.198][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-01 16:01:46.199][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-01 16:01:46.200][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-01 16:01:46.201][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-01 16:01:46.202][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-01 16:01:46.203][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-01 16:01:46.204][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-01 16:01:46.205][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-01 16:01:46.206][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-01 16:01:46.207][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-01 16:01:46.208][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-01 16:01:46.209][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-01 16:01:46.210][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-01 16:01:46.211][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-01 16:01:46.212][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-01 16:01:46.213][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-01 16:01:46.214][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-01 16:01:46.215][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-01 16:01:46.216][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-01 16:01:46.217][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-01 16:01:46.218][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-01 16:01:46.219][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-01 16:01:46.220][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-01 16:01:46.221][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-01 16:01:46.222][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-01 16:01:46.223][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-01 16:01:46.224][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-01 16:01:46.225][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-01 16:01:46.229][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-01 16:01:46.230][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:01:46.232][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:46.233][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.234][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:46.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:46.319][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-01 16:01:46.326][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:46.327][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.328][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-01 16:01:46.328][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.329][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.330][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.331][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.331][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.333][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-01 16:01:46.333][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.334][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.335][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-01 16:01:46.336][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.336][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-01 16:01:46.336][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-01 16:01:46.337][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.338][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.338][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:01:46.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.342][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.343][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:01:46.343][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-01 16:01:46.344][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.344][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.345][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.346][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.347][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:01:46.348][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.349][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-01 16:01:46.349][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.350][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.351][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.352][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.352][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.353][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.354][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:46.355][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.355][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.356][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-01 16:01:46.357][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-01 16:01:46.358][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.359][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:46.360][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:01:46.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.362][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.364][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:46.364][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:46.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.366][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.367][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.368][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:01:46.369][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.370][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-01 16:01:46.371][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.371][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.372][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.394][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.395][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.396][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.396][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:46.397][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.398][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.399][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-01 16:01:46.399][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.400][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:46.401][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.402][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:46.402][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:46.402][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:46.402][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:01:46.403][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.404][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.406][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.407][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:46.407][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:46.407][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:01:46.408][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.408][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.409][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.410][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:01:46.411][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:01:46.412][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.413][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-01 16:01:46.413][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.414][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:46.415][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.416][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.416][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.417][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.418][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:46.419][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:46.419][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.420][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-01 16:01:46.421][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:46.421][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-01 16:01:46.421][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:01:46.422][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:46.423][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:46.423][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:01:46.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.425][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:46.426][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:46.427][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:46.427][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:46.428][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:46.428][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:46.428][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:01:46.429][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:46.430][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:46.430][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:46.431][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:01:46.436][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-01 16:01:46.437][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:01:46.438][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:01:46.439][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-01 16:01:46.440][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:01:46.441][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-01 16:01:46.458][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:46.459][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-01 16:01:46.461][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:46.464][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-01 16:01:46.467][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:46.468][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:46.469][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-01 16:01:46.470][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:46.470][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:46.471][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-02-01 16:01:46.478][biodb::testThat]
biodb.INFO [2025-02-01 16:01:46.479][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-01 16:01:46.479][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:46.480][biodb::testThat]
biodb.TRACE[2025-02-01 16:01:46.483][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-02-01 16:01:46.484][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:01:46.487][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:01:46.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:46.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.533][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.541][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.570][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:46.625][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-02-01 16:01:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.739][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.760][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.765][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.777][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.777][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.783][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.798][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-02-01 16:01:46.823][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:01:46.824][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:01:46.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:46.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:46.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:46.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:46.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:46.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:46.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.857][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.858][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:46.897][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-01 16:01:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.014][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:47.015][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.026][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.027][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:47.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:47.033][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:47.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:47.035][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:01:47.042][biodb::testThat]
biodb.INFO [2025-02-01 16:01:47.043][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-01 16:01:47.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:47.044][biodb::testThat]
biodb.DEBUG[2025-02-01 16:01:47.046][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-02-01 16:01:47.051][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:01:47.054][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2025-02-01 16:01:47.055][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2025-02-01 16:01:47.056][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:01:47.057][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:01:47.058][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:01:47.059][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:01:47.060][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:01:47.060][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:01:47.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:47.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:47.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:47.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:47.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:47.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:47.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:47.073][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-01 16:01:47.093][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:01:47.093][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:01:47.094][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-02-01 16:01:48.583][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-02-01 16:01:49.966][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:01:49.967][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-02-01 16:01:49.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-02-01 16:01:49.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:49.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:49.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:49.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:49.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:49.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:49.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:50.012][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-02-01 16:01:50.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:01:50.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:01:50.035][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-02-01 16:01:51.436][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-02-01 16:01:52.744][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:01:52.746][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-02-01 16:01:52.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-02-01 16:01:52.751][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-02-01 16:01:52.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:01:52.753][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:01:52.754][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:01:52.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:52.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:52.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:52.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:52.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:52.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:52.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.786][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:52.787][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:52.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:52.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:52.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:52.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:52.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:52.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:52.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:52.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.837][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:52.838][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:52.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:52.887][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-02-01 16:01:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:01:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:01:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:01:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:01:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:01:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:01:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:01:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:01:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:01:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:01:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:01:52.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:01:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:01:52.915][biodb::testThat]
biodb.INFO [2025-02-01 16:01:52.916][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-01 16:01:52.917][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:52.917][biodb::testThat]
biodb.INFO [2025-02-01 16:01:52.923][biodb::testThat]
biodb.INFO [2025-02-01 16:01:52.923][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-01 16:01:52.924][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:52.925][biodb::testThat]
biodb.WARN [2025-02-01 16:01:52.939][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-01 16:01:52.956][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-01 16:01:52.964][biodb::testThat]
biodb.INFO [2025-02-01 16:01:52.965][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-01 16:01:52.965][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:52.966][biodb::testThat]
biodb.TRACE[2025-02-01 16:01:52.985][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:01:53.036][biodb::testThat]
biodb.INFO [2025-02-01 16:01:53.037][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-01 16:01:53.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:53.039][biodb::testThat]
biodb.INFO [2025-02-01 16:01:53.046][biodb::testThat]
biodb.INFO [2025-02-01 16:01:53.046][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-01 16:01:53.047][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:53.048][biodb::testThat]
biodb.INFO [2025-02-01 16:01:53.054][biodb::testThat]
biodb.INFO [2025-02-01 16:01:53.055][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-01 16:01:53.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:53.056][biodb::testThat]
biodb.DEBUG[2025-02-01 16:01:53.059][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-01 16:01:54.373][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-02-01 16:01:55.758][biodb::testThat]
biodb.INFO [2025-02-01 16:01:55.759][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-01 16:01:55.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:55.760][biodb::testThat]
biodb.INFO [2025-02-01 16:01:55.765][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-01 16:01:55.766][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-01 16:01:55.767][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-01 16:01:55.768][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-01 16:01:55.768][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:55.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:55.770][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.771][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-01 16:01:55.779][biodb::testContext]
biodb.INFO [2025-02-01 16:01:55.779][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:01:55.780][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-02-01 16:01:55.781][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:01:55.781][biodb::testContext]
biodb.INFO [2025-02-01 16:01:55.783][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:01:55.784][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-01 16:01:55.787][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:55.788][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-01 16:01:55.789][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.791][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-01 16:01:55.792][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.795][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-01 16:01:55.795][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.798][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-01 16:01:55.799][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-01 16:01:55.800][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-01 16:01:55.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.802][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-01 16:01:55.803][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-01 16:01:55.804][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.812][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-01 16:01:55.813][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-01 16:01:55.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.816][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-01 16:01:55.816][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-01 16:01:55.817][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-01 16:01:55.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.820][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-01 16:01:55.820][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.823][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-01 16:01:55.824][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-01 16:01:55.824][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-01 16:01:55.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.827][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:01:55.828][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-01 16:01:55.828][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-01 16:01:55.829][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-01 16:01:55.830][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-01 16:01:55.831][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-01 16:01:55.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.833][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-01 16:01:55.834][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-01 16:01:55.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.837][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-01 16:01:55.837][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-01 16:01:55.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.840][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-01 16:01:55.841][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-01 16:01:55.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.843][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-01 16:01:55.844][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-01 16:01:55.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.847][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-01 16:01:55.848][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-01 16:01:55.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.850][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:01:55.851][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-01 16:01:55.866][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-01 16:01:55.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.869][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-01 16:01:55.870][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-01 16:01:55.871][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-01 16:01:55.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.873][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-01 16:01:55.875][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.875][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-01 16:01:55.876][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.877][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:55.878][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.878][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.879][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.880][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.881][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:01:55.881][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:55.882][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.883][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-01 16:01:55.884][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:55.884][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.885][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:01:55.886][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:55.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:55.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.891][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.892][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:55.893][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:55.893][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.894][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.895][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-01 16:01:55.896][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.897][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:01:55.898][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.898][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:55.899][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.904][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.904][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.905][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.906][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:01:55.906][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:55.907][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.908][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-01 16:01:55.909][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:55.909][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.910][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:01:55.911][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:55.912][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.913][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:55.914][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.915][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.916][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:55.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:55.918][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.919][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.920][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-01 16:01:55.921][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.922][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-01 16:01:55.923][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.923][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:55.924][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.925][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.926][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.926][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.927][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:01:55.928][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:55.929][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.929][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-01 16:01:55.930][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:55.931][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.931][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.932][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.933][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:55.934][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.935][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:55.936][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.937][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.938][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.938][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:55.939][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:55.940][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.940][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.941][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-01 16:01:55.943][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.943][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:01:55.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.945][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:55.945][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.946][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.947][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.948][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.948][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:01:55.949][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:55.950][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.951][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-01 16:01:55.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:55.952][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.953][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:55.953][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.954][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:01:55.955][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.956][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.956][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:55.957][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:55.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:55.958][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:55.959][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.960][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:55.961][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:55.961][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:55.962][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:55.963][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:55.964][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:55.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:55.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:55.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:55.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:55.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.023][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-01 16:01:56.024][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-01 16:01:56.025][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-01 16:01:56.026][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-01 16:01:56.028][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-01 16:01:56.028][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-01 16:01:56.029][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-01 16:01:56.030][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-01 16:01:56.032][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-01 16:01:56.033][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-01 16:01:56.034][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-01 16:01:56.035][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-01 16:01:56.036][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-01 16:01:56.037][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-01 16:01:56.038][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:01:56.039][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:01:56.040][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-01 16:01:56.041][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-01 16:01:56.042][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-01 16:01:56.043][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-01 16:01:56.044][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-01 16:01:56.045][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-01 16:01:56.046][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-01 16:01:56.047][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-01 16:01:56.048][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-01 16:01:56.049][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-01 16:01:56.050][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-01 16:01:56.051][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-01 16:01:56.052][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-01 16:01:56.052][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-01 16:01:56.053][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-01 16:01:56.054][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-01 16:01:56.059][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-01 16:01:56.060][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-01 16:01:56.061][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-01 16:01:56.062][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-01 16:01:56.063][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-01 16:01:56.064][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-01 16:01:56.065][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-01 16:01:56.066][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-01 16:01:56.067][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-01 16:01:56.068][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-01 16:01:56.069][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-01 16:01:56.070][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-01 16:01:56.071][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-01 16:01:56.072][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:01:56.073][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-01 16:01:56.074][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-01 16:01:56.075][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-01 16:01:56.076][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-01 16:01:56.077][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-01 16:01:56.078][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-01 16:01:56.079][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-01 16:01:56.080][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-01 16:01:56.081][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-01 16:01:56.082][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-01 16:01:56.083][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-01 16:01:56.084][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-01 16:01:56.085][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-01 16:01:56.086][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-01 16:01:56.087][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-01 16:01:56.088][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-01 16:01:56.089][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-01 16:01:56.090][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-01 16:01:56.091][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-01 16:01:56.092][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-01 16:01:56.093][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-01 16:01:56.094][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-01 16:01:56.095][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-01 16:01:56.096][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-01 16:01:56.097][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-01 16:01:56.098][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-01 16:01:56.099][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-01 16:01:56.100][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-01 16:01:56.101][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-01 16:01:56.102][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-01 16:01:56.103][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-01 16:01:56.104][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-01 16:01:56.105][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-01 16:01:56.106][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-01 16:01:56.107][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-01 16:01:56.108][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-01 16:01:56.109][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-01 16:01:56.110][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-01 16:01:56.111][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:01:56.112][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:01:56.112][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.114][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:01:56.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.200][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-01 16:01:56.201][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:56.203][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.203][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-01 16:01:56.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:56.205][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.206][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.207][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.208][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.208][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-01 16:01:56.209][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:56.210][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.210][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-01 16:01:56.211][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:56.212][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-01 16:01:56.212][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-01 16:01:56.216][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:56.217][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:56.218][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:01:56.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.219][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.220][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:56.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.222][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.223][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:01:56.223][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-01 16:01:56.223][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:56.224][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:56.225][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.225][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:56.226][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:01:56.227][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.228][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-01 16:01:56.229][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:56.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.232][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.232][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.233][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:56.234][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:56.235][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.235][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-01 16:01:56.236][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-01 16:01:56.237][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:56.238][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:56.239][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:01:56.240][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.240][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.241][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:56.242][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.243][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.243][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.244][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:56.244][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:56.245][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:56.245][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:56.246][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.247][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:56.248][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:01:56.249][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:56.250][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-01 16:01:56.251][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:56.252][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.253][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.254][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.255][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.255][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:56.256][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:56.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.258][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:01:56.260][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:56.261][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:01:56.261][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:01:56.261][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:01:56.262][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:01:56.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:56.265][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.266][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.267][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:56.267][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:56.267][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:01:56.267][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:56.268][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:56.269][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.269][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:01:56.270][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:01:56.272][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.272][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-01 16:01:56.273][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:01:56.275][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.275][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.276][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.277][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.277][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:01:56.278][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:01:56.279][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.280][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-01 16:01:56.280][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:01:56.281][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-01 16:01:56.281][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:01:56.282][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:01:56.283][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:01:56.283][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:01:56.284][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.285][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.285][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:01:56.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:01:56.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:01:56.287][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:01:56.288][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:01:56.288][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:01:56.288][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:01:56.289][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:01:56.290][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:01:56.290][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:01:56.295][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:01:56.296][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-01 16:01:56.297][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:01:56.298][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:01:56.299][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-01 16:01:56.300][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:01:56.301][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-01 16:01:56.307][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:01:56.308][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-02-01 16:01:56.309][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:01:56.310][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-01 16:01:56.311][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.311][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.312][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-01 16:01:56.313][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.359][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-02-01 16:01:56.362][biodb::testThat]
biodb.INFO [2025-02-01 16:01:56.363][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-01 16:01:56.364][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:01:56.370][biodb::testThat]
biodb.TRACE[2025-02-01 16:01:56.375][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-02-01 16:01:56.376][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:01:56.378][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:01:56.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:56.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:56.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.403][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:56.404][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:56.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.409][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:56.410][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:56.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.416][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:56.417][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:56.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.422][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:56.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:56.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.429][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:56.429][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:56.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:56.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:56.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:56.474][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-02-01 16:01:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:56.491][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:01:56.511][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:56.512][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-01 16:01:56.512][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:01:56.557][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-01 16:01:56.558][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.559][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-01 16:01:56.567][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.569][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-01 16:01:56.570][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.570][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-01 16:01:56.571][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.572][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-01 16:01:56.581][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-02-01 16:01:56.582][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-02-01 16:01:56.583][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:01:56.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-02-01 16:01:56.585][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:01:56.586][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:01:56.587][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:01:56.588][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:01:56.588][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:01:56.589][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:01:56.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:56.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:56.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:56.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:56.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:56.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:56.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:56.599][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2025-02-01 16:01:56.601][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:01:56.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:01:56.603][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2025-02-01 16:01:57.899][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2025-02-01 16:01:59.204][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:01:59.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2025-02-01 16:01:59.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2025-02-01 16:01:59.217][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2025-02-01 16:01:59.219][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:01:59.220][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:01:59.220][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:01:59.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:59.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:59.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:59.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:59.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:59.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:59.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.243][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:59.243][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:59.278][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-02-01 16:01:59.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:01:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:01:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:01:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:01:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.381][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.383][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:59.384][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.405][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:59.405][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.425][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.426][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.450][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.451][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.471][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.472][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:01:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:01:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.493][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:59.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.496][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.508][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.514][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:59.519][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:01:59.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.531][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.532][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.537][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.538][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.543][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.549][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.550][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.555][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.556][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.561][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:01:59.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.567][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.568][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.573][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.574][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.582][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-02-01 16:01:59.583][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:01:59.584][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:01:59.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:59.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:59.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:59.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:59.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:59.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:59.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:01:59.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.612][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.613][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:01:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:01:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.618][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:59.619][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:01:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:01:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.624][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:59.625][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.627][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:01:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:01:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.631][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:59.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.633][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.634][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:01:59.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:01:59.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.637][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.638][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:01:59.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:01:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:01:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:01:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:59.678][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-02-01 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:01:59.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:01:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:01:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:01:59.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:01:59.698][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:01:59.698][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-02-01 16:01:59.730][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:01:59.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-02-01 16:01:59.747][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:01:59.747][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:01:59.748][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:01:59.749][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:01:59.750][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:01:59.750][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:01:59.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:01:59.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:01:59.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:01:59.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:01:59.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:01:59.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:01:59.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:01:59.768][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-02-01 16:01:59.770][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:01:59.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:01:59.772][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-02-01 16:02:01.099][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-02-01 16:02:02.416][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:02.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-02-01 16:02:02.421][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-02-01 16:02:02.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-02-01 16:02:02.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:02.425][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:02.426][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:02.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:02.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:02.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:02.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:02.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:02.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:02.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.447][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.448][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:02.489][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-02-01 16:02:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:02.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.575][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.596][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:02.597][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.621][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:02.622][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.633][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.642][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.643][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.663][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.664][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.689][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.690][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:02.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:02.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.710][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:02.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.731][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.731][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.743][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.743][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.753][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.754][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.766][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.766][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.772][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.772][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:02.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.784][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.784][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.790][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.790][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-02-01 16:02:02.802][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:02.803][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:02.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:02.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:02.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:02.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:02.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:02.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:02.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:02.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.836][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.836][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.843][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:02.843][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.853][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:02.854][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.860][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:02.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.867][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.868][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.869][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:02.910][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-02-01 16:02:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:02.930][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:02:02.931][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-02-01 16:02:02.932][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:02.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-02-01 16:02:02.934][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:02.935][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-02-01 16:02:02.936][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:02.937][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:02.937][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:02.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:02.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:02.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:02.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:02.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:02.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:02.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.957][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.958][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.960][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:02.992][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-01 16:02:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.090][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.095][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:03.096][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.116][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:03.117][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.137][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.138][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.162][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.163][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.182][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.183][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.194][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.203][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:03.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.228][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:03.229][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.240][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.240][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.245][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.246][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.251][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.257][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.258][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.263][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.264][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.269][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:03.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.275][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.276][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.281][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.282][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.290][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-02-01 16:02:03.291][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:03.292][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:03.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:03.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:03.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:03.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:03.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:03.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:03.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:03.316][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.322][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.323][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.328][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:03.329][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.335][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:03.336][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.341][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:03.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.348][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.348][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.352][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:03.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:03.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:03.520][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-02-01 16:02:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.524][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:03.535][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:02:03.536][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-02-01 16:02:03.536][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:03.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-02-01 16:02:03.538][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:03.539][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:03.540][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:03.541][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:03.541][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:03.542][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:02:03.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:03.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:03.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:03.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:03.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:03.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:03.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:03.552][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-02-01 16:02:03.554][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:03.555][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:03.555][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-02-01 16:02:04.929][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-02-01 16:02:06.323][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:06.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-02-01 16:02:06.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-02-01 16:02:06.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-02-01 16:02:06.331][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:06.331][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:06.332][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:06.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:06.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:06.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:06.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:06.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:06.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:06.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.353][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:06.354][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:06.390][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-02-01 16:02:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.472][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.485][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.495][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:06.495][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.507][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:06.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.517][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:06.518][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.520][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:06.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.540][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.541][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.563][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.563][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.582][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.590][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.591][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.609][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:06.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.624][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.629][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:06.630][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.641][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.641][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.646][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.647][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.652][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.658][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.664][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.665][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:06.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.675][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.676][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.681][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.682][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.695][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-02-01 16:02:06.696][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:06.697][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:06.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:06.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:06.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:06.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:06.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:06.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:06.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:06.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.737][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.737][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.743][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:06.744][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.747][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:06.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.752][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:06.752][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.756][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:06.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.759][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:06.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.763][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:06.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.766][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.766][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:06.810][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-02-01 16:02:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.814][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:06.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:06.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:06.826][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:02:06.827][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-02-01 16:02:06.827][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:06.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-02-01 16:02:06.829][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:06.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:06.831][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:06.832][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:06.832][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:06.833][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:02:06.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:06.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:06.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:06.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:06.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:06.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:06.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:06.843][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-02-01 16:02:06.845][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:06.846][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:06.847][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-02-01 16:02:08.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-02-01 16:02:09.666][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:09.668][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-02-01 16:02:09.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-02-01 16:02:09.673][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-02-01 16:02:09.675][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:09.675][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:09.676][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:09.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:09.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:09.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:09.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:09.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:09.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:09.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.703][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:09.704][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:09.748][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-02-01 16:02:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:09.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.842][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:09.843][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.863][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:09.863][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.883][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.884][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.886][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.904][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.904][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.924][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:09.925][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:09.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:09.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.944][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:09.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:09.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.965][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:09.966][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.977][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.977][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.987][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.988][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:09.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:09.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:09.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:09.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:09.999][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:10.000][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:10.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.005][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:10.005][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:10.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.010][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:10.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:10.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.016][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.017][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.022][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.022][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.029][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-02-01 16:02:10.030][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:10.031][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:10.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:10.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:10.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:10.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:10.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:10.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:10.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:10.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.053][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:10.054][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.056][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:10.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.059][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:10.060][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:10.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.065][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:10.066][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:10.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.071][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:10.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.077][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.078][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:10.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:10.115][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-02-01 16:02:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:10.131][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:02:10.132][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-02-01 16:02:10.132][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:10.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-02-01 16:02:10.134][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:10.135][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:10.136][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:10.136][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:10.137][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:10.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:02:10.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:10.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:10.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:10.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:10.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:10.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:10.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:10.148][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-02-01 16:02:10.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:10.151][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:10.152][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-02-01 16:02:11.501][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-02-01 16:02:12.919][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:12.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-02-01 16:02:12.924][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-02-01 16:02:12.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-02-01 16:02:12.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:12.928][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:12.929][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:12.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:12.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:12.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:12.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:12.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:12.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:12.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.954][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:12.955][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.958][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:12.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:12.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:12.990][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-02-01 16:02:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.994][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:13.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:13.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.092][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.094][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:13.095][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.096][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.097][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.109][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.114][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:13.115][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.134][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.135][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.137][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.154][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.155][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.175][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.175][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.186][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:13.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:13.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.195][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:13.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:13.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.209][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.215][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:13.216][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.227][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.228][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.233][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.234][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.244][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.245][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.250][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.251][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:13.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.261][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.262][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.267][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.268][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.275][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-02-01 16:02:13.276][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:13.276][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:13.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:13.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:13.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:13.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:13.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:13.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:13.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:13.291][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.298][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.298][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.304][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:13.304][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:13.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.310][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:13.311][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.316][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:13.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.327][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.327][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:13.364][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-02-01 16:02:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:13.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:13.380][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-01 16:02:13.381][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-02-01 16:02:13.381][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:13.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-02-01 16:02:13.383][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:13.384][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:13.385][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:13.386][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:13.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:13.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-01 16:02:13.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:13.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:13.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:13.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:13.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:13.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:13.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:13.397][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-02-01 16:02:13.399][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:13.400][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:13.401][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-02-01 16:02:14.770][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-02-01 16:02:16.132][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:16.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-02-01 16:02:16.136][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-02-01 16:02:16.138][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-02-01 16:02:16.140][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:16.141][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:16.142][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-01 16:02:16.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:16.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:16.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:16.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:16.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:16.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:16.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.164][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:16.165][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.167][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:16.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:16.199][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-02-01 16:02:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.202][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:16.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:16.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:16.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.287][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.293][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.294][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.305][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.314][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:16.314][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.336][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.342][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.342][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.361][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.362][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.381][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.381][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.383][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.421][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:16.422][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.424][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-01 16:02:16.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.434][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.434][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.440][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.441][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.452][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.453][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.458][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.459][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:16.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.469][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.470][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.475][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.476][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.482][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-02-01 16:02:16.483][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:16.483][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:16.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:16.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:16.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:16.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:16.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:16.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:16.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:16.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.499][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.500][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.505][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:16.506][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.508][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.509][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.514][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:16.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:16.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.517][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.518][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:16.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:16.549][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-02-01 16:02:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:16.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.562][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:16.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.639][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.648][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.649][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.668][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.669][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:16.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.686][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:16.687][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:16.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:16.692][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.693][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:16.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:16.694][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:16.701][biodb::testThat]
biodb.INFO [2025-02-01 16:02:16.701][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-01 16:02:16.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:16.703][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:16.704][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-02-01 16:02:16.705][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-02-01 16:02:16.706][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-02-01 16:02:16.707][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-01 16:02:16.736][loadFileContents] Loaded 7 files from cache: [7]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-02-01 16:02:16.737][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:16.738][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:16.739][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:16.740][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:16.740][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-01 16:02:16.745][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2025-02-01 16:02:16.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:16.747][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:16.748][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2025-02-01 16:02:16.884][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2025-02-01 16:02:16.884][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:16.885][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:16.886][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2025-02-01 16:02:17.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2025-02-01 16:02:17.311][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:17.312][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-02-01 16:02:17.313][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-02-01 16:02:17.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.337][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.338][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.343][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.344][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.347][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.350][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.350][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.356][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.362][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.363][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.415][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.416][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.421][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.422][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.425][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.428][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.428][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.431][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.434][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.440][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.441][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.504][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.511][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.511][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.517][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.518][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.521][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.523][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.524][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.530][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.536][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.537][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.538][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.594][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.595][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.601][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.601][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.607][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.608][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.613][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.620][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.620][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.696][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.696][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.703][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.704][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.710][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.711][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.717][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.724][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.725][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.777][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.784][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.784][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.790][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.791][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.796][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.797][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.802][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.806][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.809][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.809][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.878][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.878][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.884][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.884][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.890][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.890][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.896][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.902][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.902][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:17.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:17.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:17.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:17.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:17.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:17.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:17.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:17.942][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.948][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.949][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.951][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-01 16:02:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-01 16:02:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.954][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-01 16:02:17.954][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-01 16:02:17.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.957][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.957][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-01 16:02:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-01 16:02:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.962][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-01 16:02:17.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:17.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.965][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.966][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-01 16:02:17.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-01 16:02:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:18.056][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-02-01 16:02:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:18.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:18.161][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.162][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-01 16:02:18.163][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.163][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:18.166][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.168][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:18.169][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-02-01 16:02:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:18.189][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-02-01 16:02:18.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-01 16:02:18.196][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:18.197][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:18.198][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2025-02-01 16:02:18.254][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2025-02-01 16:02:18.255][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:18.256][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:18.257][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2025-02-01 16:02:18.320][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:18.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2025-02-01 16:02:18.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2025-02-01 16:02:18.326][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-02-01 16:02:18.339][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.340][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-01 16:02:18.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.341][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:18.377][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-01 16:02:18.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:18.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-02-01 16:02:18.382][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:18.383][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-02-01 16:02:18.397][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.398][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-01 16:02:18.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.399][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:18.421][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-02-01 16:02:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:18.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.439][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:18.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:18.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:18.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:18.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:18.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:18.464][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.465][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-01 16:02:18.466][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.466][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.475][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.476][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-01 16:02:18.476][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.477][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.483][biodb::testThat]
biodb.INFO [2025-02-01 16:02:18.484][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:18.484][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:18.485][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:18.488][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-02-01 16:02:22.578][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-02-01 16:02:25.574][biodb::testThat]
biodb.INFO [2025-02-01 16:02:25.575][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:25.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:25.576][biodb::testThat]
biodb.INFO [2025-02-01 16:02:25.581][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-01 16:02:25.582][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-02-01 16:02:25.583][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-02-01 16:02:25.583][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-01 16:02:25.597][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-01 16:02:25.598][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-01 16:02:25.598][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.599][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.601][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-01 16:02:25.604][biodb::testContext]
biodb.INFO [2025-02-01 16:02:25.605][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:02:25.606][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-02-01 16:02:25.606][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:02:25.607][biodb::testContext]
biodb.INFO [2025-02-01 16:02:25.608][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:02:25.609][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-01 16:02:25.612][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:25.613][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-01 16:02:25.614][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.616][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-01 16:02:25.617][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.619][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-01 16:02:25.620][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.622][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-01 16:02:25.623][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-01 16:02:25.624][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-01 16:02:25.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.626][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-01 16:02:25.627][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-01 16:02:25.628][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.630][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-01 16:02:25.631][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-01 16:02:25.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.633][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-01 16:02:25.634][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-01 16:02:25.635][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-01 16:02:25.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.637][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-01 16:02:25.638][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.640][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-01 16:02:25.641][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-01 16:02:25.642][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-01 16:02:25.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.644][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:02:25.645][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-01 16:02:25.646][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-01 16:02:25.646][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-01 16:02:25.647][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-01 16:02:25.648][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-01 16:02:25.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.650][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-01 16:02:25.651][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-01 16:02:25.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.654][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-01 16:02:25.654][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-01 16:02:25.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.657][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-01 16:02:25.658][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-01 16:02:25.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.660][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-01 16:02:25.661][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-01 16:02:25.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.664][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-01 16:02:25.664][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-01 16:02:25.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.667][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:02:25.668][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-01 16:02:25.682][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-01 16:02:25.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.685][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-01 16:02:25.685][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-01 16:02:25.686][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-01 16:02:25.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.689][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-01 16:02:25.690][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.691][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-01 16:02:25.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:25.693][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.694][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.694][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.695][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.696][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:02:25.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:25.697][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.698][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-01 16:02:25.699][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:25.699][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.700][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.701][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:25.701][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:25.701][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:25.701][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:02:25.701][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:02:25.702][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:25.702][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.703][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.704][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:25.704][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.705][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.705][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.706][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.707][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:25.707][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:25.708][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.709][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.710][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-01 16:02:25.711][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.712][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:02:25.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:25.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.714][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.715][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.716][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.716][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:02:25.717][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:25.718][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.719][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-01 16:02:25.719][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:25.720][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:02:25.721][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:02:25.722][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:25.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.724][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:25.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.725][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.726][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.727][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.727][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:25.728][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:25.729][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.729][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.730][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-01 16:02:25.731][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.732][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-01 16:02:25.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.734][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:25.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.737][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:02:25.738][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:25.739][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.739][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-01 16:02:25.740][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:25.741][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.741][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.742][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.743][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:25.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.745][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:25.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.747][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.748][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:25.749][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:25.749][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.750][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.751][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-01 16:02:25.752][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.753][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:02:25.754][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.754][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:25.755][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.756][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.756][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.757][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.758][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:02:25.758][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:25.759][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.760][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-01 16:02:25.761][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:25.761][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.762][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.763][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.763][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:25.764][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.765][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.765][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:25.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:25.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:25.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.768][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.769][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:25.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:25.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:25.771][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:25.772][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:25.772][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.828][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-01 16:02:25.829][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-01 16:02:25.830][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-01 16:02:25.831][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-01 16:02:25.832][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-01 16:02:25.833][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-01 16:02:25.834][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-01 16:02:25.835][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-01 16:02:25.836][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-01 16:02:25.837][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-01 16:02:25.838][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-01 16:02:25.839][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-01 16:02:25.840][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-01 16:02:25.841][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-01 16:02:25.842][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:02:25.843][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:02:25.844][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-01 16:02:25.844][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-01 16:02:25.845][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-01 16:02:25.846][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-01 16:02:25.847][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-01 16:02:25.848][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-01 16:02:25.849][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-01 16:02:25.850][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-01 16:02:25.856][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-01 16:02:25.857][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-01 16:02:25.858][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-01 16:02:25.858][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-01 16:02:25.859][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-01 16:02:25.860][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-01 16:02:25.861][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-01 16:02:25.862][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-01 16:02:25.863][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-01 16:02:25.864][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-01 16:02:25.865][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-01 16:02:25.866][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-01 16:02:25.867][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-01 16:02:25.868][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-01 16:02:25.869][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-01 16:02:25.870][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-01 16:02:25.870][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-01 16:02:25.871][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-01 16:02:25.872][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-01 16:02:25.873][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-01 16:02:25.874][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-01 16:02:25.875][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:02:25.876][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-01 16:02:25.877][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-01 16:02:25.878][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-01 16:02:25.879][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-01 16:02:25.880][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-01 16:02:25.881][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-01 16:02:25.882][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-01 16:02:25.883][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-01 16:02:25.884][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-01 16:02:25.884][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-01 16:02:25.885][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-01 16:02:25.886][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-01 16:02:25.887][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-01 16:02:25.888][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-01 16:02:25.889][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-01 16:02:25.890][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-01 16:02:25.891][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-01 16:02:25.892][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-01 16:02:25.893][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-01 16:02:25.894][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-01 16:02:25.895][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-01 16:02:25.896][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-01 16:02:25.897][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-01 16:02:25.898][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-01 16:02:25.898][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-01 16:02:25.899][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-01 16:02:25.900][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-01 16:02:25.901][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-01 16:02:25.902][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-01 16:02:25.903][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-01 16:02:25.904][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-01 16:02:25.905][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-01 16:02:25.906][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-01 16:02:25.907][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-01 16:02:25.908][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-01 16:02:25.909][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-01 16:02:25.910][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-01 16:02:25.911][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-01 16:02:25.912][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:02:25.913][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:25.913][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.915][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:25.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:25.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:25.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:25.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:25.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:25.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:25.991][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-01 16:02:25.992][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:02:25.994][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.994][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-01 16:02:25.995][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.996][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:25.997][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.997][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.998][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:25.999][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:25.999][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-01 16:02:26.000][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:26.001][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.001][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-01 16:02:26.002][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:26.003][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-01 16:02:26.003][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-01 16:02:26.004][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:26.004][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:26.005][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:02:26.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.006][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.007][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:26.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.009][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.009][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:26.009][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-01 16:02:26.010][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:26.011][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:26.011][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.012][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:26.013][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:02:26.014][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.015][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-01 16:02:26.016][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.016][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:26.017][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.018][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.019][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.019][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.020][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:26.021][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:26.021][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.022][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-01 16:02:26.023][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-01 16:02:26.024][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:26.025][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:26.026][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:02:26.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.027][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.027][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:26.028][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.029][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.030][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.030][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:26.030][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:26.031][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:26.032][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:26.032][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.033][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:26.034][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:02:26.035][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:26.036][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-01 16:02:26.037][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.037][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:26.038][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.039][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.039][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.040][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.041][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:26.042][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:26.042][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.043][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.044][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:26.045][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:26.046][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:26.046][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:26.046][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:26.047][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:02:26.047][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.048][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:26.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.050][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.051][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:26.051][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:26.051][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:02:26.052][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:26.052][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:26.053][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.054][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:26.055][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:02:26.056][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.057][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-01 16:02:26.058][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.058][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:26.059][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.060][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.061][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.062][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:26.063][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:26.063][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.064][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-01 16:02:26.065][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:26.066][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-01 16:02:26.066][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:02:26.066][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:26.067][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:26.068][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:02:26.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.070][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:26.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:26.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:26.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:26.072][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:26.072][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:26.072][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:02:26.073][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:26.074][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:26.075][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:26.075][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:26.076][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-01 16:02:26.077][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:02:26.078][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:02:26.079][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-01 16:02:26.080][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:02:26.082][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-01 16:02:26.087][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:02:26.088][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-02-01 16:02:26.088][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:02:26.090][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-01 16:02:26.090][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:26.091][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:26.092][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-01 16:02:26.093][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:26.094][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:26.100][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:26.103][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-02-01 16:02:26.106][biodb::testThat]
biodb.INFO [2025-02-01 16:02:26.107][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-01 16:02:26.107][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:26.108][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:26.110][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-02-01 16:02:26.111][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:26.113][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:26.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:26.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:26.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:26.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:26.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:26.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:26.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:26.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.130][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.131][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.137][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.142][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.142][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.148][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.148][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.153][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.154][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.159][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.165][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.182][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.183][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.188][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.194][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.195][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.200][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.200][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.214][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:26.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.231][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.240][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:26.280][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-02-01 16:02:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:26.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.361][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.380][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.400][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.441][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.441][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.480][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.481][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.501][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.502][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.521][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.541][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.542][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.581][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.657][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.662][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.663][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.668][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.674][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.675][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.679][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.680][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.685][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.686][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.691][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.708][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.709][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.731][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.732][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.737][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.738][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.743][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-02-01 16:02:26.744][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:26.745][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:26.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:26.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:26.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:26.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:26.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:26.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:26.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:26.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.761][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.762][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.767][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.768][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.774][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.779][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.785][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.785][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.787][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.790][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.808][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.809][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.814][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.815][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.820][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.826][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.826][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.831][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.832][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:26.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:26.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:26.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:26.915][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-02-01 16:02:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:26.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.053][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.065][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.074][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.075][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.115][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.116][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.180][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.180][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.199][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.220][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.220][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.240][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.241][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.260][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.260][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.291][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.298][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.304][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.304][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.310][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.315][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.321][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.322][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.327][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.345][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.345][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.350][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.368][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.369][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.374][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.375][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.376][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:27.382][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.383][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-01 16:02:27.384][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.384][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:27.386][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-02-01 16:02:27.387][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:27.389][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-02-01 16:02:27.391][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-02-01 16:02:27.393][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-02-01 16:02:27.394][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:27.395][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:27.401][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:27.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:27.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:27.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:27.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:27.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:27.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:27.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:27.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.416][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.417][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.422][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.423][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.428][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.429][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.434][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.439][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.440][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.445][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:27.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.451][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.469][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.475][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:27.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:27.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:27.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:27.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:27.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:27.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:27.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:27.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:27.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.575][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.581][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.581][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.587][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.588][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.593][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.594][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.605][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:27.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.612][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:27.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:27.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.630][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.631][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.636][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:27.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.642][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.643][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:27.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.648][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.649][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.651][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:27.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:27.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:27.742][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-02-01 16:02:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:27.771][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.771][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-01 16:02:27.772][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.773][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:27.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.777][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:27.778][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-02-01 16:02:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:27.800][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-02-01 16:02:27.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-01 16:02:27.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:27.807][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-01 16:02:27.808][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:27.810][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-01 16:02:27.811][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-02-01 16:02:27.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:27.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:27.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.827][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:27.830][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.831][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-01 16:02:27.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.832][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:27.870][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-01 16:02:27.872][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:27.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-01 16:02:27.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:27.875][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-02-01 16:02:27.888][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.889][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-01 16:02:27.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.890][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:27.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.927][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:27.948][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.949][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-01 16:02:27.949][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.950][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.956][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.957][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-01 16:02:27.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.958][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.965][biodb::testThat]
biodb.INFO [2025-02-01 16:02:27.966][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:27.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:27.967][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:27.969][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-02-01 16:02:28.170][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-02-01 16:02:28.353][biodb::testThat]
biodb.INFO [2025-02-01 16:02:28.354][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:28.355][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:28.355][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:28.469][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-02-01 16:02:28.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:28.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:28.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.549][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.551][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:28.553][biodb::testThat]
biodb.INFO [2025-02-01 16:02:28.553][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-02-01 16:02:28.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:28.555][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:28.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:28.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:28.639][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-01 16:02:28.642][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:28.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-01 16:02:28.644][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:28.645][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-01 16:02:28.696][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-01 16:02:28.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:28.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-01 16:02:28.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:28.701][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-02-01 16:02:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:28.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:28.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:28.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:28.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:28.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:28.755][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:28.766][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:28.769][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:28.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-02-01 16:02:28.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:28.773][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-02-01 16:02:28.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:28.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:28.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-02-01 16:02:28.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:28.983][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-02-01 16:02:29.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:29.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-02-01 16:02:29.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.006][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-02-01 16:02:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:29.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:29.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-02-01 16:02:29.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.045][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-02-01 16:02:29.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:29.060][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-02-01 16:02:29.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.063][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-02-01 16:02:29.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:29.078][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-02-01 16:02:29.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.082][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-02-01 16:02:29.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-01 16:02:29.101][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-02-01 16:02:29.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.104][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-02-01 16:02:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:29.179][biodb::testThat]
biodb.INFO [2025-02-01 16:02:29.180][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-02-01 16:02:29.181][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:29.181][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:29.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.187][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:29.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:29.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:29.229][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:29.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:29.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:29.231][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:29.233][private$loadEntries] Creating entries from ids [3]: "172631573, 172608227, 172593299".
biodb.DEBUG[2025-02-01 16:02:29.233][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-01 16:02:29.234][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172631573, 172608227, 172593299".
biodb.TRACE[2025-02-01 16:02:29.236][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-01 16:02:29.238][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608227.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172593299.xml".
biodb.DEBUG[2025-02-01 16:02:29.239][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:29.240][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-01 16:02:29.241][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:29.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.251][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.257][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.258][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.263][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.264][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.269][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.269][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.275][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.275][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.281][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.281][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.286][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.318][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.324][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.329][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.330][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.335][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:29.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:29.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.421][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.422][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.427][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.439][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.440][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.446][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.452][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.453][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.458][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.483][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.483][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.488][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.495][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.501][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.501][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.532][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:29.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:29.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.582][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.584][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.588][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.589][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.594][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.595][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.600][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.601][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.606][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.607][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.612][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.613][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.618][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.621][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.641][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.647][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.653][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.654][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.659][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.660][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:29.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:29.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:29.762][self$createEntryFromContent] Accession numbers: 172631573, 172608227, 172593299.
biodb.DEBUG[2025-02-01 16:02:29.763][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:29.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.779][private$selectFields]
biodb.TRACE[2025-02-01 16:02:29.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:29.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:29.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.787][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.788][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.792][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:29.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.823][private$selectFields]
biodb.TRACE[2025-02-01 16:02:29.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:29.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:29.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.832][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.836][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:29.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-01 16:02:29.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:29.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.862][private$selectFields]
biodb.TRACE[2025-02-01 16:02:29.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:29.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:29.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.871][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:29.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.875][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:29.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-01 16:02:29.885][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:29.886][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:29.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:29.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:29.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:29.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:29.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:29.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:29.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:29.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:29.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:29.904][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:29.905][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:29.960][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:29.961][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:29.962][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:29.963][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:30.064][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:30.065][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-02-01 16:02:30.068][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-02-01 16:02:30.070][private$loadEntries] Creating entries from ids [3]: "172642450, 172529292, 172529260".
biodb.DEBUG[2025-02-01 16:02:30.071][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-01 16:02:30.072][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172642450, 172529292, 172529260".
biodb.TRACE[2025-02-01 16:02:30.073][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:30.073][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:30.074][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:30.075][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:30.076][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:30.076][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:30.077][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-01 16:02:30.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.DEBUG[2025-02-01 16:02:30.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:30.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:30.088][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.TRACE[2025-02-01 16:02:30.227][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML).
biodb.TRACE[2025-02-01 16:02:30.456][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172642450.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml"
biodb.DEBUG[2025-02-01 16:02:30.458][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:30.459][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-01 16:02:30.460][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:30.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:30.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:30.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:30.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:30.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:30.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:30.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:30.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.476][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.477][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.482][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.483][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.494][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.495][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.500][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.506][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.529][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.530][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.535][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.541][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.542][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.548][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:30.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:30.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:30.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:30.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:30.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:30.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:30.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:30.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.635][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.636][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.642][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.642][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.648][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.649][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.655][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.660][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.666][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.690][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.691][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.704][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.711][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.711][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.717][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.717][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:30.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:30.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:30.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:30.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:30.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:30.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:30.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:30.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.805][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.806][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.811][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.812][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.817][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.818][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.823][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.824][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.829][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.830][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.835][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.848][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.859][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.860][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.865][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.871][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.872][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.877][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.878][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.918][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:30.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:30.981][self$createEntryFromContent] Accession numbers: 172642450, 172529292, 172529260.
biodb.DEBUG[2025-02-01 16:02:30.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:31.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.030][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.039][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.042][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:31.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.067][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.075][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.076][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.079][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-01 16:02:31.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.104][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.109][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.114][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.117][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-01 16:02:31.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:31.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:31.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:31.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:31.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:31.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:31.219][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:31.221][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:31.222][private$loadEntries] Creating entries from ids [3]: "172623142, 172622621, 172602027".
biodb.DEBUG[2025-02-01 16:02:31.223][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-01 16:02:31.224][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172623142, 172622621, 172602027".
biodb.TRACE[2025-02-01 16:02:31.225][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-01 16:02:31.228][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172623142.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172622621.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172602027.xml".
biodb.DEBUG[2025-02-01 16:02:31.228][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:31.229][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-01 16:02:31.230][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:31.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.241][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.247][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.248][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.254][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.259][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.260][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.265][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.266][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.271][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.272][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.277][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.301][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.302][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.307][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.309][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.313][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.314][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.319][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:31.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.408][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.409][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.414][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.415][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.420][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.421][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.433][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.438][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.439][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.444][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.450][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.469][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.475][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.493][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:31.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:31.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:31.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:31.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.578][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.579][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.584][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.584][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.590][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.591][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.596][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.597][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.602][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.603][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.608][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.632][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.638][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.644][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.645][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:31.755][self$createEntryFromContent] Accession numbers: 172623142, 172622621, 172602027.
biodb.DEBUG[2025-02-01 16:02:31.755][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:31.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.771][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.781][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.784][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-01 16:02:31.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.809][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.810][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.812][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.818][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.819][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.821][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.822][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-01 16:02:31.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.847][private$selectFields]
biodb.TRACE[2025-02-01 16:02:31.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:31.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:31.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.856][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:31.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.860][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:31.870][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-01 16:02:31.870][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:31.871][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:31.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:31.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:31.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:31.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:31.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:31.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:31.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:31.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:31.887][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:31.888][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:31.889][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:31.944][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:31.944][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:31.946][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:31.947][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:32.066][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:32.068][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-02-01 16:02:32.071][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-02-01 16:02:32.073][private$loadEntries] Creating entries from ids [2]: "172641880, 172634706".
biodb.DEBUG[2025-02-01 16:02:32.074][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:32.075][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172641880, 172634706".
biodb.TRACE[2025-02-01 16:02:32.076][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:32.076][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:32.077][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:32.078][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:32.079][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:32.079][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:32.091][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-01 16:02:32.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.DEBUG[2025-02-01 16:02:32.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:32.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:32.103][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.TRACE[2025-02-01 16:02:32.234][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML).
biodb.TRACE[2025-02-01 16:02:32.420][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641880.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml"
biodb.DEBUG[2025-02-01 16:02:32.422][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:32.423][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:32.424][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:32.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:32.435][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.441][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.442][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.447][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.448][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.453][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.454][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.459][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.471][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:32.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.477][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:32.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:32.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:32.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:32.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.495][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:32.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.501][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:32.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.507][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:32.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:32.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.609][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.610][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.615][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.621][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.627][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.628][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.633][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:32.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:32.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:32.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:32.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.641][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:32.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:32.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:32.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.657][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:32.658][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:32.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.671][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:32.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:32.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.683][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.684][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:32.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:32.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:32.774][self$createEntryFromContent] Accession numbers: 172641880, 172634706.
biodb.DEBUG[2025-02-01 16:02:32.775][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:32.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.815][private$selectFields]
biodb.TRACE[2025-02-01 16:02:32.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:32.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:32.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.824][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.831][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.835][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:32.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.861][private$selectFields]
biodb.TRACE[2025-02-01 16:02:32.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:32.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:32.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.869][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.870][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.874][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:32.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.899][private$selectFields]
biodb.TRACE[2025-02-01 16:02:32.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:32.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:32.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.915][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:32.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-01 16:02:32.930][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:32.930][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:32.938][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:32.947][biodb::testThat]
biodb.INFO [2025-02-01 16:02:32.948][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-02-01 16:02:32.949][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:32.949][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:32.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:32.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:32.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:32.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:32.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:32.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:32.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:32.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:32.997][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:32.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-02-01 16:02:32.999][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:33.001][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-02-01 16:02:33.002][private$loadEntries] Creating entries from ids [1]: "172574413".
biodb.DEBUG[2025-02-01 16:02:33.003][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:33.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172574413".
biodb.TRACE[2025-02-01 16:02:33.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:33.007][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172574413.xml".
biodb.DEBUG[2025-02-01 16:02:33.008][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:33.009][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:33.009][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:33.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:33.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.027][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.032][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.033][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.039][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.045][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.045][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.051][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.051][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:33.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:33.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.063][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:33.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:33.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.069][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:33.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:33.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:33.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.081][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:33.082][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:33.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.087][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:33.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:33.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.093][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:33.094][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:33.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:33.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:33.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:33.100][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:33.188][self$createEntryFromContent] Accession numbers: 172574413.
biodb.DEBUG[2025-02-01 16:02:33.188][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:33.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.205][private$selectFields]
biodb.TRACE[2025-02-01 16:02:33.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:33.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:33.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.214][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.217][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.227][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:33.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.243][private$selectFields]
biodb.TRACE[2025-02-01 16:02:33.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:33.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:33.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.252][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.256][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-01 16:02:33.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.281][private$selectFields]
biodb.TRACE[2025-02-01 16:02:33.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:33.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:33.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.290][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:33.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.294][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172574413].
biodb.DEBUG[2025-02-01 16:02:33.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:33.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:33.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:33.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:33.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:33.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:33.323][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:33.379][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:33.380][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:33.381][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:33.382][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:33.451][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:33.452][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-02-01 16:02:33.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-02-01 16:02:33.457][private$loadEntries] Creating entries from ids [2]: "172524779, 172415476".
biodb.DEBUG[2025-02-01 16:02:33.458][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:33.459][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172524779, 172415476".
biodb.TRACE[2025-02-01 16:02:33.460][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:33.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:33.461][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:33.462][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:33.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:33.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:33.464][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-01 16:02:33.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.DEBUG[2025-02-01 16:02:33.467][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:33.468][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:33.469][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.TRACE[2025-02-01 16:02:33.731][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML).
biodb.TRACE[2025-02-01 16:02:33.947][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml"
biodb.DEBUG[2025-02-01 16:02:33.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:33.949][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:33.950][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:33.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:33.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:33.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:33.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:33.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:33.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:33.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:33.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.967][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.968][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.973][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.979][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.980][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.985][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.986][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.991][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.992][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:33.997][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:33.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:33.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.003][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:34.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:34.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:34.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:34.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.027][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.031][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:34.031][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:34.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.037][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:34.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:34.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.043][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.043][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.045][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.049][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.050][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:34.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.139][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.145][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.151][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.151][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.157][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.163][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.163][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.169][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:34.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:34.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:34.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:34.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:34.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.192][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:34.193][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:34.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.199][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:34.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.205][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.205][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.211][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.211][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:34.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:34.306][self$createEntryFromContent] Accession numbers: 172524779, 172415476.
biodb.DEBUG[2025-02-01 16:02:34.307][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:34.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.327][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.339][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.342][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:34.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.367][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.368][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.377][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.380][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-02-01 16:02:34.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.406][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.408][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.415][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.419][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2025-02-01 16:02:34.429][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:34.430][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:34.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:34.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:34.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:34.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-02-01 16:02:34.478][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:34.479][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-02-01 16:02:34.480][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:34.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.496][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.496][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.505][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-01 16:02:34.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.539][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.540][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.549][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.553][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-01 16:02:34.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.578][private$selectFields]
biodb.TRACE[2025-02-01 16:02:34.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:34.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:34.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:34.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.590][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:34.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-01 16:02:34.601][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:34.602][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:34.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:34.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:34.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:34.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:34.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:34.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:34.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:34.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:34.618][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:34.619][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:34.620][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:34.820][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:34.821][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:34.822][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:34.824][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:34.890][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:34.892][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-02-01 16:02:34.895][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-02-01 16:02:34.897][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2025-02-01 16:02:34.898][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:34.899][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2025-02-01 16:02:34.900][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:34.901][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:34.902][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:34.902][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:34.903][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:34.904][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:34.904][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-01 16:02:34.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2025-02-01 16:02:34.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:34.908][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:34.909][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2025-02-01 16:02:35.024][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2025-02-01 16:02:35.289][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2025-02-01 16:02:35.290][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:35.291][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:35.292][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:35.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.309][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.310][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.315][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.316][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.321][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.322][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.327][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.333][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.334][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.339][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:35.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:35.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.345][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:35.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:35.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:35.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:35.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.362][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:35.363][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:35.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.365][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:35.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.371][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.372][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:35.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.475][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.476][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.481][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.482][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.487][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.488][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.493][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.494][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.499][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.500][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.505][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:35.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.511][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:35.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:35.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.529][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:35.529][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:35.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.535][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:35.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.541][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.541][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:35.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.547][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:35.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:35.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:35.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:35.636][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2025-02-01 16:02:35.636][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:35.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.653][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.668][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.671][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:35.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.697][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.706][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.710][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.719][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2025-02-01 16:02:35.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.735][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.744][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.748][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2025-02-01 16:02:35.758][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:35.759][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:35.775][biodb::testThat]
biodb.INFO [2025-02-01 16:02:35.776][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-02-01 16:02:35.777][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:35.778][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:35.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:35.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:35.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:35.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:35.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:35.829][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:35.830][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:35.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.846][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.855][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.859][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:35.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.884][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.885][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.893][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.896][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-01 16:02:35.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.927][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.936][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.940][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:35.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-01 16:02:35.950][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:35.951][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:35.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:35.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:35.967][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:35.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-01 16:02:35.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:35.970][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-01 16:02:35.971][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:35.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:35.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:35.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:35.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:35.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:35.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:35.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.987][private$selectFields]
biodb.TRACE[2025-02-01 16:02:35.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:35.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:35.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:35.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:35.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:35.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:35.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.000][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:36.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.026][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.035][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.039][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-01 16:02:36.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.063][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.064][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.073][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.076][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-01 16:02:36.087][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:36.087][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:36.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:36.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:36.145][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:36.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:36.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:36.148][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:36.149][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:36.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.170][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.173][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.179][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.180][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.183][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-01 16:02:36.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.209][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.218][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.222][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-01 16:02:36.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.247][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.256][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.260][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-01 16:02:36.270][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:36.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:36.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:36.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:36.288][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:36.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-01 16:02:36.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:36.290][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-01 16:02:36.292][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:36.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.308][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:36.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.346][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.359][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:36.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.384][private$selectFields]
biodb.TRACE[2025-02-01 16:02:36.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:36.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:36.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.393][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:36.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.397][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-01 16:02:36.407][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:36.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:36.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.444][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:36.445][biodb::testThat]
biodb.INFO [2025-02-01 16:02:36.446][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-02-01 16:02:36.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:36.447][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:36.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:36.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:36.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:36.495][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:36.496][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:36.552][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:36.553][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:36.554][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:36.555][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:36.623][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:36.624][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-02-01 16:02:36.627][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-02-01 16:02:36.629][private$loadEntries] Creating entries from ids [2]: "75629699, 172639225".
biodb.DEBUG[2025-02-01 16:02:36.630][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:36.631][cch$loadFileContent] Trying to load 2 files from cache: [2]: "75629699, 172639225".
biodb.TRACE[2025-02-01 16:02:36.632][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:36.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:36.634][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:36.634][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:36.635][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:36.636][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:36.637][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-01 16:02:36.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/75629699,172639225/XML".
biodb.DEBUG[2025-02-01 16:02:36.640][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:36.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:36.641][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/75629699,172639225/XML".
biodb.TRACE[2025-02-01 16:02:36.757][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/75629699,172639225/XML).
biodb.TRACE[2025-02-01 16:02:36.975][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/75629699.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639225.xml"
biodb.DEBUG[2025-02-01 16:02:36.977][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:36.978][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:36.979][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:36.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:36.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:36.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:36.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:36.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:36.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:36.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:36.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:36.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:36.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.996][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:36.996][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:36.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:36.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.002][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.003][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.009][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.014][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.015][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.020][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.021][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.026][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.038][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.050][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:37.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:37.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.056][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.062][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.063][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.068][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.069][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:37.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:37.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:37.169][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.175][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.176][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.182][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.183][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.188][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.189][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.195][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.195][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.201][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.202][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.207][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.232][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:37.233][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:37.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.238][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.245][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.251][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.251][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:37.343][self$createEntryFromContent] Accession numbers: 75629699, 172639225.
biodb.DEBUG[2025-02-01 16:02:37.344][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:37.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.361][private$selectFields]
biodb.TRACE[2025-02-01 16:02:37.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:37.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:37.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-01 16:02:37.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.407][private$selectFields]
biodb.TRACE[2025-02-01 16:02:37.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:37.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:37.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.417][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.420][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-01 16:02:37.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.446][private$selectFields]
biodb.TRACE[2025-02-01 16:02:37.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:37.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:37.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.456][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:37.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.460][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:37.470][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:37.471][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:37.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:37.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:37.488][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:37.489][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:37.490][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:37.546][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:37.547][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:37.548][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:37.549][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:37.617][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:37.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-02-01 16:02:37.622][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-02-01 16:02:37.624][private$loadEntries] Creating entries from ids [2]: "172617828, 172612147".
biodb.DEBUG[2025-02-01 16:02:37.625][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-01 16:02:37.626][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172617828, 172612147".
biodb.TRACE[2025-02-01 16:02:37.627][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:37.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:37.628][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:37.629][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:37.630][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:37.631][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:37.632][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-01 16:02:37.633][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147/XML".
biodb.DEBUG[2025-02-01 16:02:37.635][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:37.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:37.637][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147/XML".
biodb.TRACE[2025-02-01 16:02:37.742][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147/XML).
biodb.TRACE[2025-02-01 16:02:37.908][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172617828.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172612147.xml"
biodb.DEBUG[2025-02-01 16:02:37.910][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:37.911][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-01 16:02:37.912][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:37.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:37.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:37.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:37.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:37.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:37.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:37.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:37.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.932][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.933][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:37.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.935][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.936][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.938][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.939][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.944][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.951][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.969][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:37.970][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:37.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.972][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.978][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.979][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.985][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:37.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:38.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.044][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.045][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.061][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.062][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.068][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.075][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.076][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.081][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.082][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.088][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:38.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:38.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:38.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:38.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:38.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:38.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:38.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.114][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:38.115][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:38.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.117][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:38.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:38.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.119][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.123][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:38.124][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.129][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:38.130][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:38.223][self$createEntryFromContent] Accession numbers: 172617828, 172612147.
biodb.DEBUG[2025-02-01 16:02:38.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:38.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.239][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.249][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.253][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:38.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.278][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.288][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.292][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2025-02-01 16:02:38.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.324][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.334][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.338][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2025-02-01 16:02:38.349][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:38.349][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:38.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:38.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:38.382][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:38.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:38.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:38.385][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:38.386][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:38.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.403][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.413][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.416][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.426][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:38.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.443][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.452][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.456][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.465][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-01 16:02:38.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.482][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.490][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.491][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.495][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-01 16:02:38.506][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:38.506][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:38.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:38.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:38.523][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:38.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-01 16:02:38.525][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:38.526][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-01 16:02:38.528][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:38.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.545][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.558][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:38.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.591][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.602][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-01 16:02:38.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.632][private$selectFields]
biodb.TRACE[2025-02-01 16:02:38.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:38.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:38.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.642][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:38.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.645][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:38.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-01 16:02:38.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:38.657][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:38.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:38.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:38.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:38.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:38.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:38.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:38.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:38.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:38.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:38.690][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:38.692][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:38.747][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:38.748][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:38.749][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:38.750][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:38.816][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:38.818][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-02-01 16:02:38.821][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-02-01 16:02:38.823][private$loadEntries] Creating entries from ids [3]: "130004307, 172638764, 172638763".
biodb.DEBUG[2025-02-01 16:02:38.824][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-01 16:02:38.825][cch$loadFileContent] Trying to load 3 files from cache: [3]: "130004307, 172638764, 172638763".
biodb.TRACE[2025-02-01 16:02:38.826][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-01 16:02:38.827][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:38.827][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:38.828][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:38.829][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:38.830][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:38.830][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-01 16:02:38.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.DEBUG[2025-02-01 16:02:38.833][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:38.834][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:38.835][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.TRACE[2025-02-01 16:02:38.951][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML).
biodb.TRACE[2025-02-01 16:02:39.125][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130004307.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638764.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638763.xml"
biodb.DEBUG[2025-02-01 16:02:39.127][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:39.128][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-01 16:02:39.129][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:39.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.146][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.147][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.153][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.158][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.159][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.165][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.170][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.171][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.177][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.183][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.201][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.202][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.207][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.220][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.220][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:39.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.320][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.325][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.326][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.331][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.332][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.343][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.344][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.349][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.355][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.373][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.374][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.379][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.385][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.386][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.387][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.391][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.392][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.406][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:39.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:39.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:39.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.480][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.480][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.486][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.492][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.492][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.499][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.504][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.505][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.510][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.541][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:39.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.547][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.553][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.554][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:39.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:39.657][self$createEntryFromContent] Accession numbers: 130004307, 172638764, 172638763.
biodb.DEBUG[2025-02-01 16:02:39.658][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:39.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.674][private$selectFields]
biodb.TRACE[2025-02-01 16:02:39.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:39.675][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:39.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.683][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.687][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-01 16:02:39.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.712][private$selectFields]
biodb.TRACE[2025-02-01 16:02:39.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:39.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:39.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.722][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.725][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-01 16:02:39.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.750][private$selectFields]
biodb.TRACE[2025-02-01 16:02:39.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:39.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:39.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.760][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:39.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:39.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:39.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-01 16:02:39.781][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:39.781][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:39.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:39.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:39.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:39.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:39.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:39.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:39.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:39.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:39.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:39.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:39.800][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:39.863][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:39.864][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:39.865][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:39.866][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:39.934][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:39.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-02-01 16:02:39.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-02-01 16:02:39.941][private$loadEntries] Creating entries from ids [1]: "172643109".
biodb.DEBUG[2025-02-01 16:02:39.942][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:39.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643109".
biodb.TRACE[2025-02-01 16:02:39.944][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:39.945][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:39.945][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:39.946][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:39.947][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:39.948][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:39.948][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-01 16:02:39.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.DEBUG[2025-02-01 16:02:39.951][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:39.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:39.953][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.TRACE[2025-02-01 16:02:40.034][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML).
biodb.TRACE[2025-02-01 16:02:40.148][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643109.xml"
biodb.DEBUG[2025-02-01 16:02:40.149][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:40.150][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:40.151][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:40.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.168][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.168][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.174][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.174][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.180][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.180][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.186][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.192][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.198][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:40.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:40.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:40.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:40.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:40.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:40.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:40.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:40.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.222][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:40.223][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:40.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:40.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.228][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:40.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:40.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.234][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:40.235][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:40.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.240][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:40.241][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:40.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.281][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:40.321][self$createEntryFromContent] Accession numbers: 172643109.
biodb.DEBUG[2025-02-01 16:02:40.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:40.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.348][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.358][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.362][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-01 16:02:40.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.388][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.398][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:40.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.427][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:40.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:40.452][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:40.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:40.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:40.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:40.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-02-01 16:02:40.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:40.487][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-02-01 16:02:40.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:40.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.505][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.511][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.514][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.517][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-01 16:02:40.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.543][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.552][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.556][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-01 16:02:40.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.582][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.582][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.583][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.591][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.595][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:40.612][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:40.612][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:40.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:40.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:40.630][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:40.631][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-02-01 16:02:40.631][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:40.632][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-02-01 16:02:40.634][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:40.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.649][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.650][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.660][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.664][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.673][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:40.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.688][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.698][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2025-02-01 16:02:40.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.726][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.727][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.736][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.740][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2025-02-01 16:02:40.750][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:40.751][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:40.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:40.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:40.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:40.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:40.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:40.785][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:40.786][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:40.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.802][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.803][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.812][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.816][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-01 16:02:40.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.842][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.851][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.855][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-01 16:02:40.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.887][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.888][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.890][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.898][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.901][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-01 16:02:40.912][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:40.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:40.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:40.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:40.930][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:40.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-01 16:02:40.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:40.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-01 16:02:40.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:40.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.950][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.959][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.962][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:40.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:40.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:40.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:40.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:40.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:40.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:40.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.988][private$selectFields]
biodb.TRACE[2025-02-01 16:02:40.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:40.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:40.991][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:40.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:40.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.998][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:40.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:40.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.002][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.011][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-01 16:02:41.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.027][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.036][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.040][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-01 16:02:41.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:41.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:41.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:41.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:41.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:41.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-02-01 16:02:41.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:41.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-02-01 16:02:41.087][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:41.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.103][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.105][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.112][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.116][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-01 16:02:41.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.149][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.159][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.162][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-01 16:02:41.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.188][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.197][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.201][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-01 16:02:41.211][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:41.212][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:41.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:41.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:41.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:41.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-02-01 16:02:41.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:41.231][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-02-01 16:02:41.232][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:41.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.249][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.257][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.258][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.259][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.262][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-01 16:02:41.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.287][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.297][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.300][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:41.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.326][private$selectFields]
biodb.TRACE[2025-02-01 16:02:41.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:41.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:41.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.335][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:41.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.339][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:41.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:41.350][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:41.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:41.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:41.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:41.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:41.417][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:41.473][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:41.474][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:41.475][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:41.476][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:41.561][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:41.563][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-02-01 16:02:41.566][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-02-01 16:02:41.568][private$loadEntries] Creating entries from ids [1]: "172641159".
biodb.DEBUG[2025-02-01 16:02:41.569][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:41.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172641159".
biodb.TRACE[2025-02-01 16:02:41.571][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:41.572][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:41.572][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:41.573][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:41.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:41.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:41.576][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-01 16:02:41.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641159/XML".
biodb.DEBUG[2025-02-01 16:02:41.579][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:41.580][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:41.581][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641159/XML".
biodb.TRACE[2025-02-01 16:02:41.778][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641159/XML).
biodb.TRACE[2025-02-01 16:02:41.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641159.xml"
biodb.DEBUG[2025-02-01 16:02:41.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:41.920][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:41.921][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:41.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:41.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:41.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:41.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:41.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:41.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:41.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:41.932][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:41.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.939][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:41.940][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:41.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.945][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:41.946][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:41.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:41.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.951][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:41.952][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:41.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:41.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:41.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:41.965][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.971][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:41.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:41.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:41.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:41.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:41.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:41.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:41.997][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:41.998][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:41.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:41.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.000][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:42.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:42.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.006][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.007][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.012][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.013][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.036][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:42.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:42.095][self$createEntryFromContent] Accession numbers: 172641159.
biodb.DEBUG[2025-02-01 16:02:42.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:42.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.112][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.122][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.135][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-01 16:02:42.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.162][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.172][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.176][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-01 16:02:42.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.201][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.210][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.214][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-01 16:02:42.224][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:42.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:42.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:42.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:42.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:42.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:42.244][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:42.298][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:42.299][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:42.300][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:42.301][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:42.370][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:42.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-02-01 16:02:42.374][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-02-01 16:02:42.376][private$loadEntries] Creating entries from ids [1]: "172639112".
biodb.DEBUG[2025-02-01 16:02:42.377][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:42.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172639112".
biodb.TRACE[2025-02-01 16:02:42.379][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-01 16:02:42.380][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-01 16:02:42.380][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:42.381][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:42.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-01 16:02:42.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-01 16:02:42.383][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-01 16:02:42.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML".
biodb.DEBUG[2025-02-01 16:02:42.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:42.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:42.388][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML".
biodb.TRACE[2025-02-01 16:02:42.468][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML).
biodb.TRACE[2025-02-01 16:02:42.581][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639112.xml"
biodb.DEBUG[2025-02-01 16:02:42.583][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-01 16:02:42.584][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:42.585][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-01 16:02:42.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.602][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.603][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.608][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.609][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.614][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.615][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.620][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.621][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.626][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.627][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.632][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:42.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-01 16:02:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:42.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.641][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:42.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:42.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:42.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.657][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:42.658][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.663][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:42.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-01 16:02:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.669][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.670][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.675][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.676][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:42.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-01 16:02:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-01 16:02:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-01 16:02:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-01 16:02:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-01 16:02:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:42.769][self$createEntryFromContent] Accession numbers: 172639112.
biodb.DEBUG[2025-02-01 16:02:42.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:42.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.787][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.796][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.800][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:42.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.825][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.826][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.827][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.827][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.832][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.835][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.838][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:42.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.865][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.874][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.878][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639112].
biodb.DEBUG[2025-02-01 16:02:42.889][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:42.889][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:42.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:42.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:42.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:42.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:42.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:42.925][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:42.926][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:42.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.943][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.952][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.956][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-01 16:02:42.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:42.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:42.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:42.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:42.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:42.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:42.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.988][private$selectFields]
biodb.TRACE[2025-02-01 16:02:42.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:42.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:42.991][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:42.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:42.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.998][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:42.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:42.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.001][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.011][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-01 16:02:43.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.028][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.034][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.037][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.040][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-01 16:02:43.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:43.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:43.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:43.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:43.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:43.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-01 16:02:43.071][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:43.072][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-01 16:02:43.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:43.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.090][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.100][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.103][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:43.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.129][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.129][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.138][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.142][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:43.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.168][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.176][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.177][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.180][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-01 16:02:43.191][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:43.192][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:43.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:43.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:43.224][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:43.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:43.232][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:43.287][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:43.288][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:43.290][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:43.291][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:43.361][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:43.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-02-01 16:02:43.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-02-01 16:02:43.368][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:43.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.385][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.395][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-01 16:02:43.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.424][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.433][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.437][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-01 16:02:43.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.463][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.465][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.472][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.476][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-01 16:02:43.487][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:43.488][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:43.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:43.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:43.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-01 16:02:43.505][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-01 16:02:43.507][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-01 16:02:43.560][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-01 16:02:43.561][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-01 16:02:43.562][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-01 16:02:43.564][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-01 16:02:43.632][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-01 16:02:43.634][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-02-01 16:02:43.637][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-02-01 16:02:43.638][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:43.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.655][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.664][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.668][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-01 16:02:43.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.694][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.703][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.707][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:43.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.742][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.745][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.753][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.757][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:43.768][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:43.768][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:43.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:43.800][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:43.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:43.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-02-01 16:02:43.804][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:43.805][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-02-01 16:02:43.806][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:43.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.823][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.833][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.836][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-01 16:02:43.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.862][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.872][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.875][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-01 16:02:43.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.901][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.910][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.914][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-01 16:02:43.925][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:43.925][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:43.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:43.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:43.942][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:43.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-02-01 16:02:43.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:43.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-02-01 16:02:43.947][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:43.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.963][private$selectFields]
biodb.TRACE[2025-02-01 16:02:43.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:43.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:43.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.973][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:43.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.977][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:43.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:43.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:43.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:43.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:43.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:43.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:43.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.008][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.019][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.022][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:44.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.048][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.057][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639112].
biodb.DEBUG[2025-02-01 16:02:44.071][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:44.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:44.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:44.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:44.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:44.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:44.106][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:44.107][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:44.108][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:44.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.124][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.134][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.137][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-01 16:02:44.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.162][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.171][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.175][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-01 16:02:44.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.200][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.202][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.209][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.213][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-01 16:02:44.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:44.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:44.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:44.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:44.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:44.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-01 16:02:44.242][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:44.243][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-01 16:02:44.245][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:44.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.267][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.276][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.277][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.281][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:44.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.305][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.306][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.315][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.319][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:44.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.344][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.349][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.353][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.357][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-01 16:02:44.367][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:44.368][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:44.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:44.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:44.400][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:44.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-02-01 16:02:44.402][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:44.403][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-02-01 16:02:44.404][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:44.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.421][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.423][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.429][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.433][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-01 16:02:44.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.458][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.467][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.468][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.471][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-01 16:02:44.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.496][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.497][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.499][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.506][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.510][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-01 16:02:44.528][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:44.529][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:44.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:44.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:44.546][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:44.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-02-01 16:02:44.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:44.549][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-02-01 16:02:44.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:44.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.566][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.579][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-01 16:02:44.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.605][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.605][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.606][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.614][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.618][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-01 16:02:44.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.643][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.653][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-01 16:02:44.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.657][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-01 16:02:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-01 16:02:44.668][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:44.668][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:44.694][biodb::testThat]
biodb.INFO [2025-02-01 16:02:44.695][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-02-01 16:02:44.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:44.696][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-01 16:02:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-01 16:02:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:44.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:44.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:44.744][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:44.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:44.746][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:44.747][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:44.749][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:44.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:44.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:44.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:44.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:44.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:44.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:44.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:44.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.841][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.879][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:44.880][private$selectFields]
biodb.TRACE[2025-02-01 16:02:44.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:44.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:44.882][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:44.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:44.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:44.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.885][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.886][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.888][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.891][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.894][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.895][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.897][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.897][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:44.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:44.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:44.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:44.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.905][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.908][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:44.909][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:44.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:44.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:44.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.924][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.927][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.928][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:44.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.932][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.933][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.935][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.938][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.941][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.942][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.944][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.944][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.946][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:44.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:44.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:44.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.955][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:44.956][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:44.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:44.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:44.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.968][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.969][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.970][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.972][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.972][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:44.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.974][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:44.975][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:44.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:44.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:44.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.979][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.979][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.981][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.982][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.984][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.985][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:44.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.986][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.987][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.988][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:44.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.990][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.991][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:44.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.993][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:44.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:44.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:44.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:44.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:44.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.001][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.002][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.003][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.004][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.009][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.015][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.016][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.018][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.019][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.022][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-01 16:02:45.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:45.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:45.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:45.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:45.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:45.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:45.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.275][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.276][private$selectFields]
biodb.TRACE[2025-02-01 16:02:45.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:45.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:45.278][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.279][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.282][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.282][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.284][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.285][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.297][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.298][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.300][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.300][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.325][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.326][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.334][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.336][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.337][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.339][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.340][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.343][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.345][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.356][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.357][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.365][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.371][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.373][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.374][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.376][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.377][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.381][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.383][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.384][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.386][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.387][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.392][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.403][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.404][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.417][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.417][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.419][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.420][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.422][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-01 16:02:45.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:45.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:45.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:45.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:45.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:45.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:45.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:45.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.677][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.678][private$selectFields]
biodb.TRACE[2025-02-01 16:02:45.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:45.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:45.680][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.681][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.684][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.685][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.687][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.688][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.690][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.690][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.692][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.693][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.695][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.696][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.706][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.707][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.720][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.721][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.723][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.724][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.729][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.732][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.734][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.735][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.737][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.738][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.740][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.741][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.751][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.752][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.760][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.766][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.767][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.769][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.777][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.778][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:45.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.782][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.783][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.785][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.786][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.787][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.788][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.789][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.791][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.794][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.795][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.805][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.806][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.820][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.821][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.823][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.823][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.826][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:45.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.905][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:45.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-01 16:02:45.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:45.973][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:45.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:45.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:45.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:45.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:45.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:45.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:45.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:45.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:45.991][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:45.992][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-01 16:02:45.993][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:45.994][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-01 16:02:45.995][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:45.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:45.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:45.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:46.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:46.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:46.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:46.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.107][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.107][private$selectFields]
biodb.TRACE[2025-02-01 16:02:46.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:46.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:46.110][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.110][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.113][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.114][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.116][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.117][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.119][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.120][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.125][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.136][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.137][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.151][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.151][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.154][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.154][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.159][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.160][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.162][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.163][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.165][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.166][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.171][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.172][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.182][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.183][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.185][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.197][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.198][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.200][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.201][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.203][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.203][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.207][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.208][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.211][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.215][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.221][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.230][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.231][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.233][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.244][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.247][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.248][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.250][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-01 16:02:46.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:46.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:46.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:46.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:46.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:46.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:46.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.516][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.517][private$selectFields]
biodb.TRACE[2025-02-01 16:02:46.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:46.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:46.519][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.523][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.524][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.526][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.527][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.529][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.530][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.532][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.546][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.547][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.549][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.561][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.562][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.564][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.565][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.570][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.570][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.572][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.573][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.575][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.576][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.578][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.579][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.581][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.582][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.592][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.593][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.601][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.607][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.608][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.610][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.613][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.613][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.614][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.617][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.618][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.620][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.621][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.623][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.631][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.633][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.637][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.640][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.640][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.648][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.654][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.655][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.657][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.658][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.660][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-01 16:02:46.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:46.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:46.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:46.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:46.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:46.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:46.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.915][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.916][private$selectFields]
biodb.TRACE[2025-02-01 16:02:46.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:46.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:46.918][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:46.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.922][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.923][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.925][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.926][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.928][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.928][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.930][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.931][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.933][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.934][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.945][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.946][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.948][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:46.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:46.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:46.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.959][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.960][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:46.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.962][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.963][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:46.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:46.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.968][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:46.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.971][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.971][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:46.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.973][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.974][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:46.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.979][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.980][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:46.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:46.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:46.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:46.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:46.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.991][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:46.992][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:46.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:46.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:46.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:46.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.014][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.015][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.017][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.018][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.022][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.025][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.027][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.027][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.028][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.030][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.034][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.044][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.045][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.047][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.059][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.060][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.062][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-01 16:02:47.212][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:47.213][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:47.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:47.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:47.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:47.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:47.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:47.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:47.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:47.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:47.234][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:47.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-01 16:02:47.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:47.243][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-01 16:02:47.245][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:47.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:47.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:47.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:47.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:47.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:47.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:47.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.355][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.355][private$selectFields]
biodb.TRACE[2025-02-01 16:02:47.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:47.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:47.357][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.361][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.362][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.364][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.365][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.367][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.372][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.372][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.373][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.377][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.383][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.383][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.384][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.392][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.400][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.401][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.401][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.403][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.404][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.406][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.409][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.410][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.412][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.412][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.415][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.415][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.417][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.418][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.420][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.421][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.423][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.429][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.431][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.432][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.440][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.446][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.448][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.449][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.451][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.452][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.454][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.455][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.458][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.461][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.462][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.464][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.464][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.466][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.467][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.469][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.470][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.472][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.486][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.487][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.489][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.501][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.502][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.504][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.505][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.507][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-01 16:02:47.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:47.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:47.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:47.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:47.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:47.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:47.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.714][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.717][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.768][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.768][private$selectFields]
biodb.TRACE[2025-02-01 16:02:47.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:47.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:47.770][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.774][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.775][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.777][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.778][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.780][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.781][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.783][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.784][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.786][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.797][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.798][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.811][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.812][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.814][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.815][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.817][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.818][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.823][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.824][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.826][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.826][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.828][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.829][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.831][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.832][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.834][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.835][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.837][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.846][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.846][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.855][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.860][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.861][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.864][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.866][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.867][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:47.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.869][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.870][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:47.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.874][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.882][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.885][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.886][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.896][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:47.897][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:47.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.899][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:47.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.905][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:47.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:47.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:47.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.910][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.911][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.913][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.914][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.916][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.010][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-01 16:02:48.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:48.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:48.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:48.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:48.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:48.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:48.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.178][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.179][private$selectFields]
biodb.TRACE[2025-02-01 16:02:48.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:48.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:48.181][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.184][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.185][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.187][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.188][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.190][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.191][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.193][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.193][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.196][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.196][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.198][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.212][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.222][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.228][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.231][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.233][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.234][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.239][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.240][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.242][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.243][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.245][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.248][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.248][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.251][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.251][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.262][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.263][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.265][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.276][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.277][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.280][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.282][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.282][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.285][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.285][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.286][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.289][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.290][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.292][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.294][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.295][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.297][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.298][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.300][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.301][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.303][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.325][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.326][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.331][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-01 16:02:48.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:48.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:48.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:48.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:48.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:48.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:48.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:48.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:48.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:48.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:48.501][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:48.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-01 16:02:48.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:48.504][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-01 16:02:48.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:48.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:48.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:48.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:48.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:48.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:48.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:48.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.612][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.612][private$selectFields]
biodb.TRACE[2025-02-01 16:02:48.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:48.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:48.614][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.618][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.619][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.621][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.622][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.624][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.625][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.627][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.629][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.630][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.641][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.644][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.655][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.656][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.658][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.659][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.661][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.662][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.670][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.671][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.674][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.676][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.676][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.678][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.679][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.696][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.697][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.705][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.711][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.711][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.713][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.714][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.716][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.717][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:48.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.719][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.720][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:48.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.723][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.723][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.726][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.727][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.729][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.730][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.732][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.733][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.746][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.761][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.761][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.763][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.764][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.766][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-01 16:02:48.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:48.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:48.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:48.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:48.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:48.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:48.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:48.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:48.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:48.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.027][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.027][private$selectFields]
biodb.TRACE[2025-02-01 16:02:49.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:49.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:49.029][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.033][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.034][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.036][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.036][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.039][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.039][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.042][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.042][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.044][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.045][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.056][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.056][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.070][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.071][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.073][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.074][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.076][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.076][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.081][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.082][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.084][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.085][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.087][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.088][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.091][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.093][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.104][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.105][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.109][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.118][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.119][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.121][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.124][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.124][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.126][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.127][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.131][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.131][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.133][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.134][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.136][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.137][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.140][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.142][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.145][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.152][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.153][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.154][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.172][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.173][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.174][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.176][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.177][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.179][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.265][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-01 16:02:49.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:49.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:49.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:49.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:49.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:49.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:49.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.440][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.441][private$selectFields]
biodb.TRACE[2025-02-01 16:02:49.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:49.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:49.443][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.443][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.446][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.447][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.449][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.450][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.452][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.453][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.455][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.456][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.458][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.469][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.472][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.475][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.477][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.483][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.484][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.486][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.487][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.489][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.489][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.495][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.495][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.497][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.498][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.500][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.501][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.503][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.504][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.506][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.507][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.517][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.520][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.531][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.532][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.534][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.535][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.537][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.538][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:49.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.540][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.541][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.544][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.545][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.547][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.548][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.550][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.550][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.552][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.553][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.555][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.556][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.567][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.567][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.575][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.581][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.581][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.583][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.584][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.586][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-01 16:02:49.742][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:49.743][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:49.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:49.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:49.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:49.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:49.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:49.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:49.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:49.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:49.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:49.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:49.790][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:49.791][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:49.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:49.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:49.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:49.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:49.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:49.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:49.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:49.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.904][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.905][private$selectFields]
biodb.TRACE[2025-02-01 16:02:49.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:49.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:49.908][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:49.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.917][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.918][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.920][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.923][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.924][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.935][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.936][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.944][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.949][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.950][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.952][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.953][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:49.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:49.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.958][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.959][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:49.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.961][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.962][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:49.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.964][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.965][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:49.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.967][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.967][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.970][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.970][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:49.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:49.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:49.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:49.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:49.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:49.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.981][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:49.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:49.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:49.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:49.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.995][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.996][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:49.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:49.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:49.998][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:49.999][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.001][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.002][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.006][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.007][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.009][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.010][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.012][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.013][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.018][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.029][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.030][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.038][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.047][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.047][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.050][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-01 16:02:50.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:50.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:50.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:50.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:50.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:50.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:50.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.309][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.310][private$selectFields]
biodb.TRACE[2025-02-01 16:02:50.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:50.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:50.312][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.312][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.315][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.316][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.318][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.319][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.321][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.322][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.324][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.324][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.327][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.329][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.338][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.339][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.340][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.341][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.346][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.352][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.353][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.355][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.356][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.361][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.361][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.364][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.364][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.372][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.373][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.377][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.383][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.383][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.384][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.405][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.406][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.408][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.408][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.411][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.411][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.418][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.419][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.421][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.422][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.425][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.427][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.428][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.439][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.440][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.454][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.459][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-01 16:02:50.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:50.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:50.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:50.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:50.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:50.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:50.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.717][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.718][private$selectFields]
biodb.TRACE[2025-02-01 16:02:50.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:50.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:50.720][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.723][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.724][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.726][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.727][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.729][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.730][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.732][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.733][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.746][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.761][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.762][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.764][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.765][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.770][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.770][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.772][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.773][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.775][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.776][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.778][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.779][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.781][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.782][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.793][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.793][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.795][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.801][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.807][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.808][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.813][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.813][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:50.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.817][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.818][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.820][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.821][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.823][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.823][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.825][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.826][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.828][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.829][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.839][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.853][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.854][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.856][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.857][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:50.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.859][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:50.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:50.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:50.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:50.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-01 16:02:51.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:51.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:51.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:51.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:51.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:51.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:51.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:51.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:51.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:51.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:51.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:51.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-01 16:02:51.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:51.038][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-01 16:02:51.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:51.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:51.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:51.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:51.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:51.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:51.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:51.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.151][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.152][private$selectFields]
biodb.TRACE[2025-02-01 16:02:51.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:51.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:51.154][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.158][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.158][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.161][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.161][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.164][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.166][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.169][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.170][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.181][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.182][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.195][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.196][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.198][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.199][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.201][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.204][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.205][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.208][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.210][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.210][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.215][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.216][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.218][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.227][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.227][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.241][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.242][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.244][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.245][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.247][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.248][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.248][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.251][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.252][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.254][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.255][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.257][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.258][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.260][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.263][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.263][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.274][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.275][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.276][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.283][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.288][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.289][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.291][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.292][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.294][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-01 16:02:51.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:51.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:51.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:51.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:51.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:51.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:51.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.551][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.552][private$selectFields]
biodb.TRACE[2025-02-01 16:02:51.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:51.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:51.554][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.555][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.558][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.560][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.561][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.563][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.564][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.566][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.567][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.580][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.594][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.594][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.597][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.602][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.603][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.605][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.611][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.614][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.615][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.617][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.618][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.620][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.632][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.640][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.646][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.647][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.650][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.651][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.652][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.653][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.656][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.657][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.659][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.660][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.662][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.662][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.665][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.665][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.667][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.668][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.678][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.679][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.687][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.693][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.693][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.695][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.696][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.698][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-01 16:02:51.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:51.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:51.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:51.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:51.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:51.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:51.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:51.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.958][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.959][private$selectFields]
biodb.TRACE[2025-02-01 16:02:51.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:51.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:51.961][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:51.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:51.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.965][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.965][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.968][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.968][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.970][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.971][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:51.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.976][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.977][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:51.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:51.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:51.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:51.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:51.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.988][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:51.989][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:51.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:51.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:51.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:51.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:51.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:51.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:51.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.006][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.007][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.012][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.014][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.015][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.017][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.018][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.021][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.023][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.035][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.036][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.044][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.050][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.051][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.053][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.053][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.056][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.056][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.060][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.061][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.063][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.064][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.066][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.069][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.069][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.072][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.083][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.086][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.092][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.104][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.105][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.108][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.111][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-01 16:02:52.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:52.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:52.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:52.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:52.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:52.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:52.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:52.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:52.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:52.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:52.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:52.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-01 16:02:52.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:52.287][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-01 16:02:52.288][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:52.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:52.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:52.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:52.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:52.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:52.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:52.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.402][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.403][private$selectFields]
biodb.TRACE[2025-02-01 16:02:52.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:52.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:52.405][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.408][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.409][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.411][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.412][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.414][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.415][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.417][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.417][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.419][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.420][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.431][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.432][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.445][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.448][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.448][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.450][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.451][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.456][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.457][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.459][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.462][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.462][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.464][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.465][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.468][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.478][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.493][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.495][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.496][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.498][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.499][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.501][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.502][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.502][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.511][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.512][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.514][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.515][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.517][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.528][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.528][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.538][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.542][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.542][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.544][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.545][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.547][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.700][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-01 16:02:52.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:52.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:52.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:52.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:52.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:52.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:52.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.806][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.807][private$selectFields]
biodb.TRACE[2025-02-01 16:02:52.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:52.808][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:52.809][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.810][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.813][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.813][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.815][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.816][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.824][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.825][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.829][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.831][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.832][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.843][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.843][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.857][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.858][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.860][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.860][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.862][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.863][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.865][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.868][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.869][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.871][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.872][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.874][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.876][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.877][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.879][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.880][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.891][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.893][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.905][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.905][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.908][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.908][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.910][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.911][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:52.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.913][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.914][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:52.915][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.917][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.918][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.920][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.921][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.923][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.926][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.927][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.929][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.929][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:52.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:52.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:52.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:52.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:52.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.940][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:52.940][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.945][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:52.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.948][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:52.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:52.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:52.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.954][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.954][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:52.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.957][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.957][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.959][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.043][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-01 16:02:53.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:53.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:53.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:53.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:53.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:53.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:53.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.221][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.221][private$selectFields]
biodb.TRACE[2025-02-01 16:02:53.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:53.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:53.223][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.224][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.227][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.228][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.230][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.231][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.233][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.233][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.235][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.236][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.238][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.239][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.241][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.249][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.250][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.264][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.264][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.266][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.267][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.269][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.270][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.275][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.276][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.278][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.280][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.281][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.284][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.286][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.287][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.304][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.305][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.320][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.322][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.323][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.325][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.326][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.328][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.329][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.329][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.332][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.333][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.335][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.336][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.338][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.339][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.340][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.341][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.342][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.344][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.345][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.349][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.355][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.356][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.361][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.370][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.372][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.372][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.373][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.375][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-01 16:02:53.523][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:53.524][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-01 16:02:53.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:53.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:53.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:53.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:53.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:53.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:53.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:53.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-01 16:02:53.548][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-01 16:02:53.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-01 16:02:53.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:53.552][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-01 16:02:53.553][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-01 16:02:53.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:53.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:53.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:53.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:53.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:53.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:53.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.661][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.661][private$selectFields]
biodb.TRACE[2025-02-01 16:02:53.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:53.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:53.663][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.670][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.671][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.673][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.675][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.676][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.678][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.679][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.689][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.690][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.692][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.703][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.704][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.706][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.707][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.709][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.710][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.714][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.720][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.723][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.724][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.727][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.737][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.737][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.740][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.751][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.751][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.753][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.754][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.756][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.757][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:53.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.759][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.760][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:53.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.763][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.764][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.766][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.772][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.773][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.775][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.775][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.793][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.794][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.802][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.807][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.808][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.813][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:53.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:53.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:53.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-01 16:02:53.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:53.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:53.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:53.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:53.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:53.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:53.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.072][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.073][private$selectFields]
biodb.TRACE[2025-02-01 16:02:54.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:54.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:54.075][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.079][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.080][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.082][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.084][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.085][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.090][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.091][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.101][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.102][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.109][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.116][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.116][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.121][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.122][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.127][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.128][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.130][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.131][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.133][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.133][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.138][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.139][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.143][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.149][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.150][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.163][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.164][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.166][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.167][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.169][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.169][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.172][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.172][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.176][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.177][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.179][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.181][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.187][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.188][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.198][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.206][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.212][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.212][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.214][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.215][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.217][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-01 16:02:54.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:54.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:54.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:54.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:54.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:54.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.477][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.478][private$selectFields]
biodb.TRACE[2025-02-01 16:02:54.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-01 16:02:54.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-01 16:02:54.480][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.483][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.484][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.486][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.487][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.489][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.490][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.499][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.502][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.503][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.505][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.514][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.515][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.528][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.529][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.531][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.532][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.534][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.535][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.540][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.540][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.543][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.543][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.545][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.548][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.549][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.559][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.563][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.563][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.566][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.571][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.577][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.578][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-01 16:02:54.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.586][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.586][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-01 16:02:54.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.590][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.591][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.593][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.594][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.596][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.596][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.601][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.602][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.604][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.612][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.613][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.626][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.627][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.629][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.630][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.632][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-01 16:02:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-01 16:02:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-01 16:02:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-01 16:02:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-01 16:02:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-01 16:02:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-01 16:02:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-01 16:02:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-01 16:02:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-01 16:02:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-01 16:02:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-01 16:02:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-01 16:02:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-01 16:02:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-01 16:02:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-01 16:02:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-01 16:02:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-01 16:02:54.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-01 16:02:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-01 16:02:54.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-01 16:02:54.787][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-01 16:02:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-01 16:02:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:54.800][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-01 16:02:54.801][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-02-01 16:02:54.801][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-02-01 16:02:54.802][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-01 16:02:54.803][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:54.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:54.804][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:54.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:54.805][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-01 16:02:54.809][biodb::testContext]
biodb.INFO [2025-02-01 16:02:54.809][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:02:54.810][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-02-01 16:02:54.811][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-01 16:02:54.811][biodb::testContext]
biodb.INFO [2025-02-01 16:02:54.813][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:02:54.814][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-01 16:02:54.817][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:54.818][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-01 16:02:54.819][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.821][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-01 16:02:54.822][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.824][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-01 16:02:54.825][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.828][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-01 16:02:54.829][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-01 16:02:54.829][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-01 16:02:54.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.832][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-01 16:02:54.833][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-01 16:02:54.833][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.836][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-01 16:02:54.837][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-01 16:02:54.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.839][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-01 16:02:54.840][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-01 16:02:54.841][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-01 16:02:54.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.843][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-01 16:02:54.844][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.847][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-01 16:02:54.847][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-01 16:02:54.848][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-01 16:02:54.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.851][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:02:54.851][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-01 16:02:54.852][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-01 16:02:54.853][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-01 16:02:54.854][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-01 16:02:54.854][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-01 16:02:54.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.857][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-01 16:02:54.858][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-01 16:02:54.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.860][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-01 16:02:54.861][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-01 16:02:54.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.864][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-01 16:02:54.864][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-01 16:02:54.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.867][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-01 16:02:54.868][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-01 16:02:54.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.870][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-01 16:02:54.871][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-01 16:02:54.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.874][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-01 16:02:54.874][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-01 16:02:54.889][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-01 16:02:54.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.892][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-01 16:02:54.893][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-01 16:02:54.894][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-01 16:02:54.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:54.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:54.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:54.896][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-01 16:02:54.898][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.898][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-01 16:02:54.899][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.900][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:54.900][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.901][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.902][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.903][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.903][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:02:54.904][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:54.905][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.906][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-01 16:02:54.906][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:54.907][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:02:54.908][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:02:54.909][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:54.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.911][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:54.912][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.913][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.914][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.915][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:54.915][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:54.916][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.917][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.918][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-01 16:02:54.919][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.920][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:02:54.920][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.921][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:54.922][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.922][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.923][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.924][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.925][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:02:54.925][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:54.926][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.927][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-01 16:02:54.927][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:54.928][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.929][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-01 16:02:54.930][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:54.931][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.932][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.932][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:54.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.934][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.935][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.936][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:54.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:54.937][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.938][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.939][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-01 16:02:54.940][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.940][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-01 16:02:54.941][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.942][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:54.943][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.943][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.944][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.945][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.945][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-01 16:02:54.946][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:54.947][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.948][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-01 16:02:54.948][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:54.949][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.950][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.950][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.951][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:54.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.952][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.953][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:54.954][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.954][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.955][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.956][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.956][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:54.957][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:54.958][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.959][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.959][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-01 16:02:54.961][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.961][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-01 16:02:54.962][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:54.963][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.964][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.965][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.966][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.966][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-01 16:02:54.967][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:54.968][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.969][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-01 16:02:54.969][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:54.970][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.971][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:54.971][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.972][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-01 16:02:54.973][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.974][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:54.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:54.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:54.976][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:54.977][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:54.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:54.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:54.979][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:54.980][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:55.143][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:55.143][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.195][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-01 16:02:55.196][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-01 16:02:55.197][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-01 16:02:55.198][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-01 16:02:55.199][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-01 16:02:55.200][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-01 16:02:55.201][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-01 16:02:55.202][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-01 16:02:55.203][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-01 16:02:55.204][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-01 16:02:55.205][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-01 16:02:55.206][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-01 16:02:55.207][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-01 16:02:55.208][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-01 16:02:55.209][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:02:55.210][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:02:55.211][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-01 16:02:55.212][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-01 16:02:55.213][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-01 16:02:55.213][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-01 16:02:55.214][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-01 16:02:55.215][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-01 16:02:55.216][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-01 16:02:55.217][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-01 16:02:55.218][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-01 16:02:55.219][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-01 16:02:55.220][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-01 16:02:55.221][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-01 16:02:55.222][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-01 16:02:55.223][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-01 16:02:55.224][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-01 16:02:55.225][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-01 16:02:55.226][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-01 16:02:55.227][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-01 16:02:55.228][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-01 16:02:55.229][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-01 16:02:55.230][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-01 16:02:55.230][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-01 16:02:55.231][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-01 16:02:55.232][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-01 16:02:55.233][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-01 16:02:55.234][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-01 16:02:55.235][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-01 16:02:55.236][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-01 16:02:55.237][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-01 16:02:55.238][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:02:55.239][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-01 16:02:55.240][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-01 16:02:55.241][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-01 16:02:55.242][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-01 16:02:55.243][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-01 16:02:55.244][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-01 16:02:55.245][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-01 16:02:55.246][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-01 16:02:55.247][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-01 16:02:55.248][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-01 16:02:55.248][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-01 16:02:55.249][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-01 16:02:55.250][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-01 16:02:55.251][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-01 16:02:55.252][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-01 16:02:55.253][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-01 16:02:55.254][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-01 16:02:55.255][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-01 16:02:55.256][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-01 16:02:55.257][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-01 16:02:55.258][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-01 16:02:55.259][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-01 16:02:55.260][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-01 16:02:55.261][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-01 16:02:55.262][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-01 16:02:55.263][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-01 16:02:55.264][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-01 16:02:55.265][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-01 16:02:55.266][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-01 16:02:55.267][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-01 16:02:55.268][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-01 16:02:55.269][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-01 16:02:55.270][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-01 16:02:55.271][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-01 16:02:55.272][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-01 16:02:55.273][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-01 16:02:55.274][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-01 16:02:55.275][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-01 16:02:55.276][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-01 16:02:55.277][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-01 16:02:55.277][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.279][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-01 16:02:55.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-01 16:02:55.355][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-01 16:02:55.356][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-01 16:02:55.358][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.358][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-01 16:02:55.359][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.360][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:55.360][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.361][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.362][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.363][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.363][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-01 16:02:55.364][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:55.365][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.366][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-01 16:02:55.367][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:55.368][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-01 16:02:55.368][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-01 16:02:55.368][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:55.369][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:55.370][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:02:55.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.377][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:55.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.378][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.378][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.379][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-01 16:02:55.379][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-01 16:02:55.380][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:55.380][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:55.381][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.382][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:55.383][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-01 16:02:55.384][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.384][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-01 16:02:55.385][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.386][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:55.386][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.387][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.388][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.389][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.389][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:55.390][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:55.391][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.391][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-01 16:02:55.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-01 16:02:55.393][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:55.394][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:55.395][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-01 16:02:55.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.397][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:55.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.399][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.399][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:55.399][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:55.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:55.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:55.401][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.402][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:55.403][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-01 16:02:55.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:55.405][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-01 16:02:55.406][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.406][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:55.407][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.408][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.408][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.409][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.410][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:55.410][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:55.411][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.412][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-01 16:02:55.412][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.413][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-01 16:02:55.414][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:55.415][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-01 16:02:55.415][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-01 16:02:55.415][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-01 16:02:55.415][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:02:55.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.417][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:55.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.419][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.420][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:55.420][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:55.420][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:02:55.421][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:55.421][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:55.422][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.423][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:55.423][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:02:55.425][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.425][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-01 16:02:55.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-01 16:02:55.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.428][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.429][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.429][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.430][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-01 16:02:55.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-01 16:02:55.432][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.432][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-01 16:02:55.433][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-01 16:02:55.434][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-01 16:02:55.434][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-01 16:02:55.434][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-01 16:02:55.435][self$setPropertyValue]
biodb.DEBUG[2025-02-01 16:02:55.436][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-01 16:02:55.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-01 16:02:55.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-01 16:02:55.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-01 16:02:55.440][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-01 16:02:55.440][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-01 16:02:55.440][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-01 16:02:55.440][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-01 16:02:55.441][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-01 16:02:55.442][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-01 16:02:55.442][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-01 16:02:55.443][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:55.444][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-01 16:02:55.445][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-01 16:02:55.446][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-01 16:02:55.447][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-01 16:02:55.448][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-01 16:02:55.449][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-01 16:02:55.453][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:02:55.454][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-02-01 16:02:55.454][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-01 16:02:55.456][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-01 16:02:55.457][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:55.457][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:55.458][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-01 16:02:55.459][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:55.460][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-01 16:02:55.461][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-01 16:02:55.464][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-02-01 16:02:55.467][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.468][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-01 16:02:55.469][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.469][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:55.471][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-02-01 16:02:55.472][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:55.474][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-01 16:02:55.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:55.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:55.485][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:55.525][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-02-01 16:02:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.643][ef$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:55.649][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.650][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-01 16:02:55.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.651][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:55.653][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-02-01 16:02:55.654][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-01 16:02:55.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-02-01 16:02:55.657][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-01 16:02:55.658][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-02-01 16:02:55.659][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-02-01 16:02:55.660][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-01 16:02:55.660][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-01 16:02:55.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-01 16:02:55.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:55.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:55.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:55.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:55.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:55.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-01 16:02:55.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-01 16:02:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-01 16:02:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-01 16:02:55.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-01 16:02:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-01 16:02:55.711][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-02-01 16:02:55.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:55.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-01 16:02:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-01 16:02:55.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-01 16:02:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:55.727][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.728][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-01 16:02:55.729][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.729][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.734][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.735][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-01 16:02:55.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.736][biodb::testThat]
biodb.WARN [2025-02-01 16:02:55.739][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-01 16:02:55.742][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-01 16:02:55.749][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.749][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-01 16:02:55.750][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.751][biodb::testThat]
biodb.TRACE[2025-02-01 16:02:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-01 16:02:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-01 16:02:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-01 16:02:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-01 16:02:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-01 16:02:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-01 16:02:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-01 16:02:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-01 16:02:55.802][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.803][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-01 16:02:55.804][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.804][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.810][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.811][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-01 16:02:55.812][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.812][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.819][biodb::testThat]
biodb.INFO [2025-02-01 16:02:55.819][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:55.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:55.821][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:55.823][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-02-01 16:02:56.016][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-02-01 16:02:56.125][biodb::testThat]
biodb.INFO [2025-02-01 16:02:56.126][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-01 16:02:56.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-01 16:02:56.127][biodb::testThat]
biodb.DEBUG[2025-02-01 16:02:56.216][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-02-01 16:02:56.312][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-01 16:02:56.313][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-02-01 16:02:56.314][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-02-01 16:02:56.315][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-01 16:02:56.315][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-01 16:02:56.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-01 16:02:56.317][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-01 16:02:56.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-01 16:02:56.318][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-01 16:02:56.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]
> 
> proc.time()
   user  system elapsed 
 32.937   1.582  71.984

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** this is package ‘biodbNcbi’ version ‘1.11.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)