Multiple platform build/check report for BioC 3.21 - CHECK results for graper on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"	4752
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"	4466
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4420
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"	4375
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on lconway

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.23.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.23.0.tar.gz

StartedAt: 2024-12-16 21:22:57 -0500 (Mon, 16 Dec 2024)

EndedAt: 2024-12-16 21:24:07 -0500 (Mon, 16 Dec 2024)

EllapsedTime: 69.9 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-846.66
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-547.325
ELB improved by 299.335

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-491.448
ELB improved by 55.8775

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.04
ELB improved by 29.4073

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.754
ELB improved by 12.2863

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.024
ELB improved by 5.72992

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.115
ELB improved by 3.90907

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.646
ELB improved by 3.46942

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.286
ELB improved by 3.35991

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.99
ELB improved by 3.29609

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.872
ELB improved by 3.11766

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.137
ELB improved by 2.73513

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.956
ELB improved by 2.18097

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.367
ELB improved by 1.58886

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.274
ELB improved by 1.09305

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.528
ELB improved by 0.746283

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418
ELB improved by 0.527386

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.607
ELB improved by 0.393062

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.299
ELB improved by 0.308418

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.047
ELB improved by 0.251943

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.835
ELB improved by 0.211716

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.654
ELB improved by 0.181357

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.497
ELB improved by 0.157427

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.359
ELB improved by 0.137994

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.237
ELB improved by 0.121888

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.128
ELB improved by 0.108341

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.032
ELB improved by 0.0968137

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.945
ELB improved by 0.0869072

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.866
ELB improved by 0.0783225

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.795
ELB improved by 0.0708306

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.731
ELB improved by 0.064254

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.673
ELB improved by 0.0584523

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.619
ELB improved by 0.0533128

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.571
ELB improved by 0.0487434

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.526
ELB improved by 0.0446676

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.485
ELB improved by 0.041021

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.447
ELB improved by 0.0377491

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.412
ELB improved by 0.0348056

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.38
ELB improved by 0.0321506

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.351
ELB improved by 0.0297499

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.323
ELB improved by 0.0275739

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.297
ELB improved by 0.0255972

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.274
ELB improved by 0.0237976

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.251
ELB improved by 0.0221558

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.231
ELB improved by 0.0206551

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.212
ELB improved by 0.019281

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.193
ELB improved by 0.0180204

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.177
ELB improved by 0.0168621

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.161
ELB improved by 0.0157963

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.146
ELB improved by 0.014814

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.132
ELB improved by 0.0139074

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.119
ELB improved by 0.0130697

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.107
ELB improved by 0.0122946

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.095
ELB improved by 0.0115766

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.084
ELB improved by 0.0109108

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.074
ELB improved by 0.0102926

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.064
ELB improved by 0.00971816

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-808.781
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-556.806
ELB improved by 251.975

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.999
ELB improved by 63.807

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.643
ELB improved by 47.3559

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.664
ELB improved by 22.9796

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.7
ELB improved by 8.96342

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.799
ELB improved by 4.90095

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.413
ELB improved by 3.38624

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.74
ELB improved by 2.67289

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.443
ELB improved by 2.29713

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.373
ELB improved by 2.07005

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.472
ELB improved by 1.90136

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.721
ELB improved by 1.75009

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.121
ELB improved by 1.60006

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.675
ELB improved by 1.44594

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.387
ELB improved by 1.28856

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.253
ELB improved by 1.13399

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.262
ELB improved by 0.991137

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.394
ELB improved by 0.868155

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.623
ELB improved by 0.770458

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.925
ELB improved by 0.698063

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.284
ELB improved by 0.640625

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.703
ELB improved by 0.581414

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.186
ELB improved by 0.517105

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.726
ELB improved by 0.460005

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.308
ELB improved by 0.417557

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.921
ELB improved by 0.387042

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.558
ELB improved by 0.362874

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.217
ELB improved by 0.341052

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.897
ELB improved by 0.319926

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.598
ELB improved by 0.299728

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.316
ELB improved by 0.28186

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.047
ELB improved by 0.268393

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.785
ELB improved by 0.262136

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.518
ELB improved by 0.267496

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.226
ELB improved by 0.291903

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.881
ELB improved by 0.344633

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.458
ELB improved by 0.423587

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.956
ELB improved by 0.501294

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.392
ELB improved by 0.564627

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.758
ELB improved by 0.634279

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.055
ELB improved by 0.702806

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.328
ELB improved by 0.726995

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.635
ELB improved by 0.692325

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.012
ELB improved by 0.623033

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.474
ELB improved by 0.538174

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.026
ELB improved by 0.448238

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.664
ELB improved by 0.361927

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.379
ELB improved by 0.285203

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.158
ELB improved by 0.220624

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.99
ELB improved by 0.168375

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.862
ELB improved by 0.127412

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.766
ELB improved by 0.0961029

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.694
ELB improved by 0.072603

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.639
ELB improved by 0.0551403

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.596
ELB improved by 0.0421984

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.564
ELB improved by 0.0325821

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.538
ELB improved by 0.0253975

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.518
ELB improved by 0.0199947

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.502
ELB improved by 0.0159061

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.49
ELB improved by 0.0127947

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.479
ELB improved by 0.0104149

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.471
ELB improved by 0.00858582

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-884.037
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.604
ELB improved by 308.433

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.645
ELB improved by 57.9583

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-480.59
ELB improved by 37.0555

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.352
ELB improved by 18.2377

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.857
ELB improved by 8.49533

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.914
ELB improved by 4.94287

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.951
ELB improved by 3.96284

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.937
ELB improved by 4.01448

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.45
ELB improved by 4.48646

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.524
ELB improved by 4.92579

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.735
ELB improved by 4.78925

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.923
ELB improved by 3.81231

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.409
ELB improved by 2.51345

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.834
ELB improved by 1.57541

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.706
ELB improved by 1.12782

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.74
ELB improved by 0.966082

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.877
ELB improved by 0.862901

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.184
ELB improved by 0.692716

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.687
ELB improved by 0.497583

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.327
ELB improved by 0.36018

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.045
ELB improved by 0.281586

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.81
ELB improved by 0.235257

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.605
ELB improved by 0.204879

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.422
ELB improved by 0.183103

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.255
ELB improved by 0.166612

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.101
ELB improved by 0.153707

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.958
ELB improved by 0.14338

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.823
ELB improved by 0.134959

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.695
ELB improved by 0.127968

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.573
ELB improved by 0.122068

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.456
ELB improved by 0.117012

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.343
ELB improved by 0.112627

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.235
ELB improved by 0.108785

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.129
ELB improved by 0.105392

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.027
ELB improved by 0.102366

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.927
ELB improved by 0.0996241

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.83
ELB improved by 0.0970688

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.736
ELB improved by 0.0945816

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.644
ELB improved by 0.0920314

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.554
ELB improved by 0.0892974

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.468
ELB improved by 0.0863017

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.385
ELB improved by 0.0830335

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.305
ELB improved by 0.0795464

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.23
ELB improved by 0.0759309

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.157
ELB improved by 0.0722792

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.089
ELB improved by 0.0686635

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.023
ELB improved by 0.0651307

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.962
ELB improved by 0.0617076

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.903
ELB improved by 0.0584085

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.848
ELB improved by 0.0552411

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.796
ELB improved by 0.0522093

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.747
ELB improved by 0.0493153

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.7
ELB improved by 0.0465606

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.656
ELB improved by 0.0439467

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.615
ELB improved by 0.041475

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.575
ELB improved by 0.0391474

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.538
ELB improved by 0.0369664

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.504
ELB improved by 0.0349357

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.47
ELB improved by 0.0330604

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.439
ELB improved by 0.0313481

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.409
ELB improved by 0.0298102

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.381
ELB improved by 0.0284636

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.354
ELB improved by 0.0273347

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.327
ELB improved by 0.0264642

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.301
ELB improved by 0.025917

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.275
ELB improved by 0.0257985

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.249
ELB improved by 0.0262832

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.221
ELB improved by 0.0276681

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.191
ELB improved by 0.0304712

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.155
ELB improved by 0.035618

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.11
ELB improved by 0.0448008

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.049
ELB improved by 0.0611878

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.958
ELB improved by 0.0908573

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.813
ELB improved by 0.14501

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.578
ELB improved by 0.235131

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.249
ELB improved by 0.328969

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.917
ELB improved by 0.332019

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.663
ELB improved by 0.253832

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.486
ELB improved by 0.177622

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.36
ELB improved by 0.126254

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.266
ELB improved by 0.0934492

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.194
ELB improved by 0.0720212

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.137
ELB improved by 0.0575326

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.089
ELB improved by 0.047506

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.049
ELB improved by 0.0405686

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.013
ELB improved by 0.0359616

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.979
ELB improved by 0.0333273

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.947
ELB improved by 0.0326805

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.912
ELB improved by 0.0345436

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.872
ELB improved by 0.0403098

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.819
ELB improved by 0.0529286

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.741
ELB improved by 0.0775165

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.622
ELB improved by 0.118992

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.45
ELB improved by 0.171788

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.231
ELB improved by 0.21915

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.96
ELB improved by 0.271064

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.615
ELB improved by 0.345279

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.258
ELB improved by 0.357107

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.011
ELB improved by 0.246762

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.877
ELB improved by 0.133912

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.803
ELB improved by 0.0743501

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.755
ELB improved by 0.0474651

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.721
ELB improved by 0.0347521

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.692
ELB improved by 0.0283045

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.667
ELB improved by 0.0252173

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.643
ELB improved by 0.0244865

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.617
ELB improved by 0.0258385

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.588
ELB improved by 0.0292592

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.553
ELB improved by 0.0346091

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.512
ELB improved by 0.0410431

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.465
ELB improved by 0.0464084

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.418
ELB improved by 0.047647

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.375
ELB improved by 0.0430241

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.341
ELB improved by 0.0340687

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.317
ELB improved by 0.0242315

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.3
ELB improved by 0.0160713

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.29
ELB improved by 0.0103329

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.283
ELB improved by 0.00667104

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.236
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.417
ELB improved by 292.819

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.91
ELB improved by 58.507

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.137
ELB improved by 40.7727

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.393
ELB improved by 17.7437

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.582
ELB improved by 6.81123

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.277
ELB improved by 3.30501

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.129
ELB improved by 2.14773

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.324
ELB improved by 1.80515

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.566
ELB improved by 1.75838

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.699
ELB improved by 1.86696

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.606
ELB improved by 2.09288

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.201
ELB improved by 2.40467

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.489
ELB improved by 2.71276

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.648
ELB improved by 2.84094

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.027
ELB improved by 2.62103

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.938
ELB improved by 2.08844

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.456
ELB improved by 1.48228

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.45
ELB improved by 1.00618

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.742
ELB improved by 0.707238

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.199
ELB improved by 0.543128

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.738
ELB improved by 0.460944

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.315
ELB improved by 0.42352

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.906
ELB improved by 0.408956

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.501
ELB improved by 0.405157

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.095
ELB improved by 0.405615

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.688
ELB improved by 0.406936

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.281
ELB improved by 0.407527

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.874
ELB improved by 0.406888

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.469
ELB improved by 0.405207

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.065
ELB improved by 0.403069

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.664
ELB improved by 0.40121

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.264
ELB improved by 0.400293

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.863
ELB improved by 0.400703

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.461
ELB improved by 0.402374

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.056
ELB improved by 0.404663

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.65
ELB improved by 0.406304

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.244
ELB improved by 0.405534

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.844
ELB improved by 0.400417

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.455
ELB improved by 0.389379

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.083
ELB improved by 0.371759

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.735
ELB improved by 0.348098

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.415
ELB improved by 0.319945

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.126
ELB improved by 0.289258

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.868
ELB improved by 0.257741

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.641
ELB improved by 0.226557

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.445
ELB improved by 0.196515

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.276
ELB improved by 0.168382

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.133
ELB improved by 0.1429

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.013
ELB improved by 0.120551

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.911
ELB improved by 0.101402

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.826
ELB improved by 0.0851965

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.755
ELB improved by 0.0715721

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.694
ELB improved by 0.0602074

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.644
ELB improved by 0.0508515

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.6
ELB improved by 0.0432846

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.563
ELB improved by 0.0372812

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.53
ELB improved by 0.032604

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.501
ELB improved by 0.0290193

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.475
ELB improved by 0.0263155

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.451
ELB improved by 0.0243135

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.428
ELB improved by 0.0228693

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.406
ELB improved by 0.021871

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.385
ELB improved by 0.0212338

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.364
ELB improved by 0.0208944

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.343
ELB improved by 0.0208066

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.322
ELB improved by 0.0209371

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.301
ELB improved by 0.0212634

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.279
ELB improved by 0.0217708

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.257
ELB improved by 0.0224515

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.233
ELB improved by 0.0233031

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.209
ELB improved by 0.0243283

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.184
ELB improved by 0.025534

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.157
ELB improved by 0.0269313

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.128
ELB improved by 0.0285353

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.098
ELB improved by 0.0303655

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.065
ELB improved by 0.0324456

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.03
ELB improved by 0.0348043

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.993
ELB improved by 0.0374756

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.953
ELB improved by 0.0404988

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.909
ELB improved by 0.0439194

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.861
ELB improved by 0.0477882

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.809
ELB improved by 0.0521608

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.752
ELB improved by 0.0570946

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.689
ELB improved by 0.062644

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.62
ELB improved by 0.0688521

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.544
ELB improved by 0.0757365

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.461
ELB improved by 0.083272

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.37
ELB improved by 0.0913682

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.27
ELB improved by 0.0998517

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.161
ELB improved by 0.10846

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.045
ELB improved by 0.116856

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.92
ELB improved by 0.12467

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.788
ELB improved by 0.13155

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.651
ELB improved by 0.13721

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.51
ELB improved by 0.141458

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.365
ELB improved by 0.1442

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.22
ELB improved by 0.145424

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.075
ELB improved by 0.145178

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.931
ELB improved by 0.143521

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.791
ELB improved by 0.140483

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.655
ELB improved by 0.136033

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.525
ELB improved by 0.13009

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.402
ELB improved by 0.122574

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.289
ELB improved by 0.113507

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.186
ELB improved by 0.103105

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.094
ELB improved by 0.0918105

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.013
ELB improved by 0.0802127

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.945
ELB improved by 0.068912

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.886
ELB improved by 0.0583903

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.837
ELB improved by 0.0489509

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.797
ELB improved by 0.0407245

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.763
ELB improved by 0.0337117

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.735
ELB improved by 0.0278311

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.712
ELB improved by 0.0229594

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.693
ELB improved by 0.0189588

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.677
ELB improved by 0.0156937

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.664
ELB improved by 0.01304

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.653
ELB improved by 0.0108885

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.644
ELB improved by 0.00914665

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.480   0.264   2.752

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.054	0.018	0.072
getPIPs	0.044	0.015	0.060
graper	0.078	0.023	0.101
makeExampleData	0.010	0.002	0.011
makeExampleDataWithUnequalGroups	0.032	0.004	0.036
plotELBO	0.220	0.021	0.243
plotGroupPenalties	0.779	0.028	0.812
plotPosterior	0.580	0.022	0.605
predict.graper	1.927	0.084	2.022
print.graper	0.051	0.013	0.064