Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:40 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-18 11:44 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4537 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4543 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2113/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-18 06:27:36 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 06:36:23 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 526.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5190,5270,10116,2767,1585,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10874,55630,100,11136,26354,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,3383,10642,361,3717,2717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5551,28976,929,153,11222,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,2903,6338,51241,5551,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,518,1859,6834,10352,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6536,4744,4552,162417,131118,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,60386,9927,847,4232,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2006,239,4790,55937,9607,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57678,491,1589,51117,79144,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,7389,3596,2731,10165,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,3329,4718,7025,26003,10166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1650,3779,8678,629,55283,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3929,5730,50507,3988,6548,4726
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54809,2678,84947,1588,7916,84889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,221458,5350,9382,1346,4288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5837,492,5476,4704,79087,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10599,1509,11019,79731,2731,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,1595,2946,7077,9919,196385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5465,5327,5092,4852,79572,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,7428,9021,4548,4760,7157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60528,51293,3565,7018,84572,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,6648,221458,7355,11255,1208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 793,387082,7412,10724,388,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2875,51103,79001,2559,9572,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,89874,11231,6576,6616,2904
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29929,2235,111,8660,3115,3032
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1843,23417,83884,28976,3708,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,574447,2064,4976,23417,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4853,1514,79158,79001,9969,1394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2799,5167,1392,7450,819,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,55902,25839,2056,6261,148979
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,9382,10644,4714,10059,3813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2984,6263,4718,7172,4256,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,23291,81033,2937,694,101180976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,53905,1468,213,2864,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,8803,10165,3123,411,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50507,23400,821,5967,7409,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,3155,9919,3684,2524,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26762,9575,57761,7421,79949,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53632,599,5901,406913,8813,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57817,2063,55532,183,729238,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,5080,29960,197322,3119,54982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200205,4709,84340,5069,1588,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2847,2944,2746,9409,7248,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10159,132,25813,3958,10642,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,513,2937,11093,55283,5444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 825,9095,5373,57511,63892,3784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,4594,28951,4502,5069,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,5095,1230,55572,7078,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,100529063,5498,8714,3553,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,5971,8842,2632,11231,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,91647,54798,8651,1355,7320
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2776,10062,3034,7220,6382,7325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,63899,51052,9997,10195,63892
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,8473,3065,7494,9507,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,958,2266,5175,203,10911
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,836,3066,91942,335,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,1859,1489,387,4878,3489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,56729,387787,11132,27089,7325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,3054,2798,100131801,2052,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10559,4704,4000,1594,3119,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4716,330,79158,133,2159,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,3684,4299,221935,5054,57107
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,5230,9692,57048,3636,3162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11255,1401,2109,2673,11131,3938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,509,7035,5860,55750,4704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8195,2760,2169,213,26354,491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,509,79158,6439,10524,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,51611,26119,1268,5162,51128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,23753,347,51144,1282,4694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,491,10019,5236,3425,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,4357,5364,5744,339,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5295,54205,929,857,4915,7037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6932,4855,114548,5618,142,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6775,79133,91647,5925,9415,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8600,5009,5836,356,9095,10466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,401,8854,3667,2052,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5442,26521,3290,2799,51079,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,6391,84572,84447,2992,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,2785,801,6868,4723,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,4942,5192,5370,6514,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1869,4144,4724,3489,55340,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5190,54896,7325,3312,7428,3948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,6678,5373,490,55863,859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200810,728294,1584,55065,3783,3875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,1491,4233,5617,84649,3119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,4285,7407,83548,1786,54577
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51081,51083,345,200539,119559,7289
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,116085,57085,10857,6571,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9095,6647,2767,1586,51167,5175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,7450,8841,9692,148738,8942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3159,5713,2998,650,3304,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,316,6521,10875,23389,4351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,53346,118,406982,51081,154
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63874,2101,3304,10102,4669,3357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2539,7424,344,3423,111240474,9377
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29960,407006,64087,27141,1401,200186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,493,587,5194,3598,728294
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4160,4594,4697,3930,2524,100506742
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,2184,130120,7035,79633,6324
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7297,55065,2729,27329,3480,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,490,3670,5741,6566,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55486,3479,5193,886,64900,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2587,6448,6329,4338,28234,10911
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9420,406906,4357,2760,10724,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 185,6721,1571,1072,4854,4982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3684,3991,5350,2903,3554,518
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63931,540,6720,4942,825,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5052,643181,84557,56945,114548,3460
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,6352,1586,1798,2717,9409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,9415,5723,64131,5257,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,2597,55902,2169,405,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5723,123,5328,10008,8879,387787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,7295,3339,471,3954,3425
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
249.54 3.90 254.28
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.65 | 0.16 | 1.40 | |