Mustafa Erhan Ozer
| Snapshot Date: 2025-03-16 13:40 -0400 (Sun, 16 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-17 11:39 -0400 (Mon, 17 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2113/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-17 00:10:00 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 00:15:29 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 329.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 207,4712,200539,84889,25821,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10559,2542,151,5901,153,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5837,11231,6569,5255,1497,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,4803,4851,3783,79572,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2055,79949,574447,4855,10243,5265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,91452,11213,596,1435,25821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2864,80224,5498,9559,1571,54982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,2629,79053,10059,2693,27429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,2746,2524,51241,5588,8942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,100529063,3295,4312,9415,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,594,84705,11254,5256,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,2937,9091,54539,27329,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,1557,6341,3929,6262,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,51021,3483,80201,7276,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,3708,1353,5950,55970,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,4128,64788,65993,8560,5264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,7471,406947,100303755,55283,8202
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,6897,160287,54576,1029,53905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2170,26175,29926,5230,3034,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 858,54205,463,2115,3482,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,3382,57678,3250,104,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,5476,80222,2475,5617,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,3141,54578,5091,63899,4282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,3351,9445,4718,5228,10616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,6515,2119,6999,114814,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79944,3685,9076,5239,85446,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1351,134,4886,516,7494,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,496,4925,5261,1586,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79001,5499,54901,5579,6383,374291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3767,1583,6387,9180,10559,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23410,1468,6891,2683,5901,7052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,383,4704,7915,5617,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,177,2702,119559,5919,79087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,3630,27010,2948,4319,383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,2200,5836,2587,7916,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51293,57620,130120,3576,7421,407010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,5789,50507,2949,1116,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5629,3291,1558,23409,1734,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 107075310,4654,5595,79133,7412,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7275,686,4285,1717,6352,3551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51144,4719,9091,2597,51094,1490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57678,169026,2582,3553,23389,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,4714,104,1584,27344,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,6262,29928,479,116150,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,2247,50674,5571,4285,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55532,54805,196385,2334,2055,644974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57570,9498,1718,868,5189,3569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,5799,25821,3479,2119,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,80222,6579,3373,4338,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27235,196385,6718,23304,10102,10
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,6908,1737,7248,644974,29881
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7916,51548,100128525,5601,5406,4256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,7355,5617,3930,4312,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9663,2696,11132,64087,2271,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,7037,2101,6888,8243,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85479,6582,10524,3773,5370,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,344905,23590,599,5192,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,581,5327,4125,4729,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7124,6929,1468,7498,4878,5369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8651,6925,4695,3357,3141,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,6788,477,53905,2767,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,10243,5328,55967,2475,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,406913,123,3309,2235,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,160287,388962,3490,1909,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151306,2805,6402,7431,653,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,275,3638,7276,8743,6182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5053,7019,84274,5122,145264,7915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51081,440503,463,8471,100128525,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3992,6342,7038,4609,4780,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,5270,3489,825,9451,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55024,54205,23753,5428,3119,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,10195,11213,51422,406982,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,54931,60684,2937,10524,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,23654,5594,175,10013,5617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,255308,8517,9056,9919,6565
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54476,2487,10379,407024,5713,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,7019,1281,10382,5617,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,6678,1056,9672,10643,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,9560,10874,54549,9365,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,2903,5293,2947,572,6715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11096,57505,6492,5618,1234,4889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57107,374291,213,23474,5625,7225
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,23600,10874,116150,9607,8195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,5967,116228,6236,7372,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,57215,55970,25974,4704,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,10,5925,1636,23054,4726
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1734,434,4855,11255,51206,5194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55024,6772,2919,7132,4594,5594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 128486,2762,1802,537,7372,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57104,718,8743,4843,23291,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,186,2147,9698,2875,2653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,3145,4723,4000,355,124976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,10599,6565,9445,4668,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,1490,1582,6571,5095,6262
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2308,3606,1281,1022,2639,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,4313,3638,2487,203,4803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,4718,1806,3710,5447,84300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80070,132158,3643,183,2876,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63931,406922,116228,9332,665,3627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55818,1646,2952,2767,10857,54205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,5330,8854,7124,1672,1606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,338328,1353,2159,55532,1337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,583,79144,5321,64601,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65080,51117,4726,2903,4015,3250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55753,3954,80347,2308,6535,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,594,2944,84947,4719,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,6351,407045,338,1234,3375
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89866,859,471,85365,3709,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 476,57176,842,9945,599,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,718,5971,200186,3645,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1401,5538,8648,8803,540,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1544,4598,150379,64805,10841,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,3240,2115,471,8799,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,4790,768239,85569,2712,133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,2158,160287,23291,1581,52
--> return NULL...
2025-03-17 00:15:20.083 R[80702:422683673] XType: com.apple.fonts is not accessible.
2025-03-17 00:15:20.084 R[80702:422683673] XType: XTFontStaticRegistry is enabled.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
62.920 1.416 64.961
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.902 | 0.062 | 1.408 | |