Mustafa Erhan Ozer
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 53d7b05 |
| git_last_commit_date: 2024-08-30 17:32:42 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:40 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.7 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.7 |
| Command: E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings SVMDO_1.4.7.tar.gz |
| StartedAt: 2024-10-17 06:21:17 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 06:27:08 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 351.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings SVMDO_1.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.4.7'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 9056,81034,9672,51478,239,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55037,463,5211,3813,23530,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,2645,9968,54344,3066,1394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,5506,2947,55005,387082,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,1514,54331,7292,2056,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,51649,122961,2752,51128,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,5728,51181,3082,23556,2180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3673,145264,2328,5370,162417,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,8818,3309,5195,115286,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,6906,2683,23417,9607,2539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5595,5255,2820,23395,6582,27141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,6821,83985,148979,653509,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,6519,2717,212,629,29928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,22933,80222,374291,587,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9056,1471,79644,2335,29929,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,161247,3990,54806,64805,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,5727,8862,5805,4232,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,4683,1524,434,847,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,1394,54148,85569,1374,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8648,3958,567,284184,3600,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,291,221935,10166,1175,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9415,2697,18,1737,2647,7252
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7421,2932,84701,3440,131118,11254
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3062,2572,5288,125988,8694,28234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7048,79001,6462,11019,55065,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,4878,8517,3122,2787,1345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100130015,4035,9759,2155,255308,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,7157,405,3373,5617,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,2147,387082,5971,3709,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53346,6319,355,7352,23654,3162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,1968,5270,1374,1401,1282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,6566,10019,596,2591,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,4357,131669,79776,3651,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,7351,5068,4852,29968,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,3290,3685,5728,51079,388585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,6834,5019,91647,3416,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,406938,593,3479,89874,345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,590,3929,132001,2538,10423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,9969,4118,7391,3930,1393
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,84317,8604,26119,5563,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,779,55024,471,1234,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,4719,8243,55630,2475,6564
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,1629,1582,509,5096,617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55937,11255,652,130120,3113,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4846,1678,335,84300,6263,284958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54577,129787,4683,5291,5723,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10,9692,3382,151306,4544,3667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,219,6324,10000,79585,83854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,3081,150379,55034,8942,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,2244,3358,5019,112817,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 207,81033,2890,160287,79783,29078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7284,6340,6720,26762,388753,2992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,406906,6521,5644,1029,92667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7450,7350,1029,5443,51422,92935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,2890,5465,51094,23543,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2646,80222,4886,2203,6715,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4069,5971,84274,79144,60386,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,54896,4683,5327,1606,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,2571,407008,3710,54675,1401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,200810,55037,6338,407007,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,650,5230,30061,5160,2947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3684,9868,5330,112817,708,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,79644,2673,1588,2571,1443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85365,5069,200539,2949,18,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6338,2947,10667,2878,376497,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1812,283459,353500,5264,50506,10383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3122,3113,3081,10667,8678,3119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,2948,1906,5741,6794,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5770,80224,4547,6261,54539,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9969,51611,6934,6387,29928,407006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5194,2689,27010,1802,685,7385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,5327,1890,2693,1201,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,344,2944,51052,7040,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4683,7019,2118,3684,9415,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,23389,476,6649,3952,999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,3783,152078,1584,7248,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,2064,2146,10935,3339,406938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6351,8604,54344,1361,91942,3570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2335,3670,1268,4860,7025,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 335,81033,51241,56938,26227,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55526,7480,275,92935,81034,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,5595,10616,84987,487,4544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2946,4654,3663,79144,65993,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90865,6934,5601,2804,4299,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,104909134,1585,57048,825,1490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,563,6261,941,52,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,868,8932,3482,1436,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6351,1649,5579,8309,2878,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7421,9507,551,10020,4149,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,10730,2695,10195,5367,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,5288,124454,376497,2875,200186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,4855,3082,4878,57620,5781
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,34,150379,55343,9672,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,3251,3329,7428,1149,6891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,81704,9479,56848,153642,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,885,256471,1394,11255,5713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10195,4988,3658,2158,38,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5190,63899,2790,2584,7350,54802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,8803,842,56623,2200,9692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2647,56923,5787,3685,7498,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,10221,150,819,3938,514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 596,1738,10221,229,6556,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,5919,6351,665,10094,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3990,3692,283459,84706,5139,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 650,8813,4312,1022,1806,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,643181,5950,111240474,1182,1644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,952,479,4760,4712,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4049,5162,3596,406947,134,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,1468,5277,2804,81034,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440503,29960,847,2517,4718,28976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,1203,5189,5828,5571,1869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,9507,376497,5837,5745,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5799,486,942,819,2244,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407008,1581,3939,153,84649,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51555,23236,9945,2542,2161,51738
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
73.04 1.60 74.84
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.66 | 0.09 | 1.93 | |