Mustafa Erhan Ozer
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 53d7b05 |
| git_last_commit_date: 2024-08-30 17:32:42 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:42 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.7 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.7 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz |
| StartedAt: 2024-10-18 14:31:55 -0400 (Fri, 18 Oct 2024) |
| EndedAt: 2024-10-18 14:38:59 -0400 (Fri, 18 Oct 2024) |
| EllapsedTime: 423.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 9559,6261,6356,3339,22797,2647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8639,574447,7345,253559,355,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,3920,3032,5053,79158,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,6464,51316,84062,694,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,5330,5824,26354,26175,4988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,4012,57511,57570,51082,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,3875,3382,265,15,63892
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6262,6794,3490,3684,3156,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6571,91452,3759,7879,6696,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,10,2119,376497,5160,1910
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,119559,1356,407007,239,2157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,10157,4543,4684,3091,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,3250,4695,2645,434,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,51206,5828,3375,100303755,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6392,2791,11222,58528,6374,29843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83548,6948,7347,27232,7412,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151,686,56259,406991,145264,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,7471,3383,151,7084,6198
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,10,6391,285126,9054,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,2170,231,55526,84447,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,4282,7409,11019,7100,80207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,796,388753,54600,1348,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653,53345,7941,2590,51738,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,293,26762,10062,353500,4544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,5370,7057,4153,3123,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1374,3728,7407,63874,1471,26503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1436,28957,8799,5161,51083,83693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27344,3703,427,6329,6564,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440138,506,6821,3383,8678,285126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5970,5727,132158,57678,2115,3978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2934,3373,6341,1268,1646,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,5053,1588,221458,5250,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,124454,2646,406947,3953,1890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,3949,2799,3087,2593,253943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8659,407007,25974,596,6341,3948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,3490,6261,2683,3082,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,1893,2303,2786,9365,537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,79736,6536,7098,6382,4976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6445,10020,367,1571,26003,5617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,3482,4035,100131801,2539,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,5329,94235,7528,325,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5970,3329,6401,2713,133,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27232,1329,3958,51206,1443,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51555,10094,4828,9409,5193,23474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1583,1347,23304,51024,627,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,3174,255308,79783,2876,55065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,407004,5211,4720,5184,3141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,1738,7076,1175,3685,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,2904,3329,594,3312,1270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2115,7528,3938,23462,57104,4313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,3033,84693,7381,728294,51604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 137682,5330,4015,120227,9945,10841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169792,5241,2247,7431,3066,100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407045,8945,84947,8195,3558,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,2308,3958,1798,2688,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1641,5286,80339,3162,1859,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6445,2896,6390,5971,130120,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11132,471,652,55858,51024,84557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,34,5095,4118,3992,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,51478,57380,51293,1806,151306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,253559,23410,7841,1027,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,156,55818,836,5241,5071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1802,3995,6748,81570,10019,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3562,1436,2712,92935,1717,1589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,5476,57176,5291,5330,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 31,56923,338328,4233,3383,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,9054,55970,4715,64241,389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,344,125988,4288,22868,2170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,54600,56922,1601,10195,6696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,5176,3643,2875,2798,1392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84317,51206,2110,2584,3875,1497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5330,10642,4697,6891,26003,80224
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,572,6009,2690,55818,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197,4627,7275,4543,2717,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,11255,4547,3954,56259,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,929,160428,7450,3557,3284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,55186,3117,145264,1327,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,2936,1028,3645,84902,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406991,8431,5264,590,694,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2875,1606,1232,80222,268,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,10537,55024,100303755,6402,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5723,4779,84889,2712,821,407004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,10875,6392,55572,54344,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3460,1282,79158,79144,1514,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,6515,23175,156,3930,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4337,3250,4860,28976,6515,886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,7409,8675,3708,5369,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27429,7056,10,9945,10841,1589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,2487,6383,9076,1789,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,55532,1544,1634,8604,4828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6720,2305,4780,6569,440138,203859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3123,9575,9180,5447,2334,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,6403,84062,104,3630,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,10423,79633,1072,5213,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,153642,846,3795,3356,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54567,3030,81570,1890,3156,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203,92667,23274,6898,1075,2147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,3791,875,118,2729,5126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,84902,728,120227,6571,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,120227,54806,434,6927,6319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,3383,79053,1594,52,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,6389,3290,1636,409,10316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,51738,6536,1203,2271,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3440,7056,1056,2683,10875,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3773,207,5631,23291,1435,819
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,2542,7391,6748,56938,3383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5629,284958,6009,6718,2904,153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 654,25813,56938,2628,5563,4702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25821,175,2548,10559,51144,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,1601,1950,84705,1493,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,10166,4656,50484,344,4976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4925,79144,941,57511,26517,549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,7077,84833,57505,6329,1337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,2947,79053,652,836,7052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387,8659,345,9969,116931,197322
--> return NULL...
2024-10-18 14:38:47.542 R[7416:394669663] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
128.550 1.812 138.895
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.988 | 0.053 | 1.708 | |