Tim O. Nieuwenhuis
| Snapshot Date: 2022-11-28 14:00:12 -0500 (Mon, 28 Nov 2022) |
| git_url: https://git.bioconductor.org/packages/HPAStainR |
| git_branch: master |
| git_last_commit: fcb4d63 |
| git_last_commit_date: 2022-11-01 11:22:33 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2022-11-29 11:07:46 -0500 (Tue, 29 Nov 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2022-10-25 r83175) -- "Unsuffered Consequences" | 4462 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-10-11 r83083 ucrt) -- "Unsuffered Consequences" | 4201 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-11-13 r83342) -- "Unsuffered Consequences" | 4231 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPAStainR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPAStainR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 911/2154 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPAStainR 1.9.0 (landing page) Tim O. Nieuwenhuis
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HPAStainR |
| Version: 1.9.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPAStainR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HPAStainR_1.9.0.tar.gz |
| StartedAt: 2022-11-29 02:33:25 -0500 (Tue, 29 Nov 2022) |
| EndedAt: 2022-11-29 02:35:37 -0500 (Tue, 29 Nov 2022) |
| EllapsedTime: 132.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPAStainR.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPAStainR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HPAStainR_1.9.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/HPAStainR.Rcheck'
* using R Under development (unstable) (2022-10-11 r83083 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HPAStainR/DESCRIPTION' ... OK
* this is package 'HPAStainR' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HPAStainR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
HPAstainR 7.89 1.02 11.69
HPA_data_downloader 3.74 1.28 9.52
hpa_summary_maker 3.53 0.56 7.00
shiny_HPAStainR 2.98 0.50 6.59
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HPAStainR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL HPAStainR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'HPAStainR' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPAStainR)
HPAStainR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2022-10-11 r83083 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(HPAStainR)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tidyr
Attaching package: 'tidyr'
The following object is masked from 'package:testthat':
matches
>
> test_check("HPAStainR")
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5596382 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609266 bytes (3.4 MB)
==================================================
downloaded 3.4 MB
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
>
> proc.time()
user system elapsed
18.57 3.92 47.82
HPAStainR.Rcheck/HPAStainR-Ex.timings
| name | user | system | elapsed | |
| HPA_data_downloader | 3.74 | 1.28 | 9.52 | |
| HPAstainR | 7.89 | 1.02 | 11.69 | |
| hpa_summary_maker | 3.53 | 0.56 | 7.00 | |
| shiny_HPAStainR | 2.98 | 0.50 | 6.59 | |