Aedin Culhane
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/made4 |
| git_branch: master |
| git_last_commit: 9b6d29a |
| git_last_commit_date: 2021-10-26 11:47:44 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:54 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the made4 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1036/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.69.0 (landing page) Aedin Culhane
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: made4 |
| Version: 1.69.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:made4.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings made4_1.69.0.tar.gz |
| StartedAt: 2022-03-17 19:28:09 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:30:11 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 122.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:made4.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings made4_1.69.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/made4.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'made4/DESCRIPTION' ... OK * this is package 'made4' version '1.69.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'made4' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/made4.Rcheck/00check.log' for details.
made4.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL made4
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'made4' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'made4'
finding HTML links ... done
NCI60 html
asDataFrame html
bet.coinertia html
between.graph html
bga html
bga.jackknife html
bga.suppl html
checkfac html
chime3D html
cia html
commonMap html
comparelists html
do3d html
dudi.rwcoa html
forrwcoa html
genes html
genes1d html
getcol html
graph1D html
heatplot html
html3D html
isDataFrame html
jmol3D html
khan html
ord html
overview html
plotarrays html
plotgenes html
prettyDend html
randomiser html
s.var html
sumstats html
suppl html
topgenes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (made4)
Making 'packages.html' ... done
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0 | 0 | 0 | |
| bet.coinertia | 0.01 | 0.00 | 0.02 | |
| between.graph | 0.19 | 0.06 | 0.25 | |
| bga | 0.22 | 0.01 | 0.23 | |
| bga.jackknife | 0.86 | 0.14 | 1.00 | |
| bga.suppl | 0.22 | 0.02 | 0.23 | |
| cia | 0.14 | 0.00 | 0.14 | |
| commonMap | 0.03 | 0.00 | 0.04 | |
| comparelists | 0 | 0 | 0 | |
| do3d | 0.22 | 0.00 | 0.21 | |
| genes1d | 0.06 | 0.00 | 0.06 | |
| getcol | 0.02 | 0.00 | 0.02 | |
| graph1D | 0.06 | 0.00 | 0.06 | |
| heatplot | 1.25 | 0.02 | 1.27 | |
| html3D | 0.11 | 0.01 | 0.12 | |
| isDataFrame | 0.01 | 0.00 | 0.02 | |
| khan | 0.02 | 0.00 | 0.01 | |
| ord | 0.17 | 0.00 | 0.17 | |
| overview | 0.09 | 0.00 | 0.10 | |
| plotarrays | 0.16 | 0.00 | 0.15 | |
| plotgenes | 0.09 | 0.00 | 0.10 | |
| prettyDend | 0.07 | 0.00 | 0.06 | |
| randomiser | 0.01 | 0.00 | 0.02 | |
| s.var | 0.13 | 0.00 | 0.12 | |
| sumstats | 0.12 | 0.02 | 0.14 | |
| suppl | 0.25 | 0.01 | 0.27 | |
| topgenes | 0.41 | 0.02 | 0.42 | |