Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:28 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the made4 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1059/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
made4 1.70.0 (landing page) Aedin Culhane
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: made4 |
Version: 1.70.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings made4_1.70.0.tar.gz |
StartedAt: 2022-10-18 20:22:44 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 20:24:47 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 122.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: made4.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings made4_1.70.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/made4.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘made4/DESCRIPTION’ ... OK * this is package ‘made4’ version ‘1.70.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘made4’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-bioc/meat/made4.Rcheck/00check.log’ for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
name | user | system | elapsed | |
NCI60 | 0.006 | 0.000 | 0.007 | |
bet.coinertia | 0.01 | 0.00 | 0.01 | |
between.graph | 0.222 | 0.004 | 0.226 | |
bga | 0.292 | 0.032 | 0.323 | |
bga.jackknife | 1.148 | 0.076 | 1.224 | |
bga.suppl | 0.296 | 0.004 | 0.300 | |
cia | 0.142 | 0.004 | 0.146 | |
commonMap | 0.023 | 0.000 | 0.023 | |
comparelists | 0.001 | 0.000 | 0.000 | |
do3d | 0.316 | 0.000 | 0.316 | |
genes1d | 0.062 | 0.011 | 0.072 | |
getcol | 0.024 | 0.004 | 0.028 | |
graph1D | 0.060 | 0.000 | 0.059 | |
heatplot | 1.459 | 0.032 | 1.491 | |
html3D | 0.149 | 0.012 | 0.161 | |
isDataFrame | 0.014 | 0.000 | 0.014 | |
khan | 0.003 | 0.004 | 0.007 | |
ord | 0.187 | 0.004 | 0.191 | |
overview | 0.100 | 0.004 | 0.105 | |
plotarrays | 0.186 | 0.004 | 0.190 | |
plotgenes | 0.105 | 0.000 | 0.105 | |
prettyDend | 0.081 | 0.000 | 0.081 | |
randomiser | 0.003 | 0.000 | 0.003 | |
s.var | 0.175 | 0.003 | 0.179 | |
sumstats | 0.173 | 0.004 | 0.177 | |
suppl | 0.319 | 0.008 | 0.327 | |
topgenes | 0.067 | 0.004 | 0.071 | |