Kieran O'Neill
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/contiBAIT |
| git_branch: master |
| git_last_commit: 1a66f2b |
| git_last_commit_date: 2021-11-20 03:56:57 -0400 (Sat, 20 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:15 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the contiBAIT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/contiBAIT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 393/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| contiBAIT 1.23.1 (landing page) Kieran O'Neill
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: contiBAIT |
| Version: 1.23.1 |
| Command: rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=contiBAIT.buildbin-libdir contiBAIT_1.23.1.tar.gz |
| StartedAt: 2022-03-17 21:02:11 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:03:17 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 66.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: contiBAIT_1.23.1.zip |
| PackageFileSize: 4.766 MiB |
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### Running command:
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### rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=contiBAIT.buildbin-libdir contiBAIT_1.23.1.tar.gz
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* installing *source* package 'contiBAIT' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c buildLinkageGroups.cpp -o buildLinkageGroups.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c computeSim.cpp -o computeSim.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c orderContigsGreedy.cpp -o orderContigsGreedy.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o contiBAIT.dll tmp.def buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/contiBAIT.buildbin-libdir/00LOCK-contiBAIT/00new/contiBAIT/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT'
** help
*** installing help indices
converting help for package 'contiBAIT'
finding HTML links ... done
BAIT html
ChrTable html
ContigOrdering html
LibraryGroupList html
LinkageGroupList html
StrandFreqMatrix html
StrandReadMatrix html
StrandStateList html
StrandStateMatrix html
barplotLinkageGroupCalls-LinkageGroupList-ChrTable-method
html
clusterContigs-StrandStateMatrix-method
html
contiBAIT html
exampleChrTable html
exampleContigOrder html
exampleCrickFreq html
exampleDividedChr html
exampleLGList html
exampleLibList html
exampleReadCounts html
exampleStrandFreq html
exampleWCMatrix html
exampleWatsonFreq html
findSexGroups-LinkageGroupList-StrandStateMatrix-method
html
findSimilarLibraries html
fixLinkageGroups html
flipOrderedLinkageGroups html
highlightAssemblyErrors html
ideogramPlot-StrandReadMatrix-StrandReadMatrix-ChrTable-method
html
locateMisorients html
makeBoxPlot html
makeChrTable html
mapGapFromOverlap html
mergeFlankedLGs html
orderAllLinkageGroups html
orderContigsGreedy html
orderContigsTSP html
plotContigOrder html
plotLGDistances-LinkageGroupList-StrandStateMatrix-method
html
plotWCdistribution-StrandFreqMatrix-method
html
preprocessStrandTable-StrandFreqMatrix-method
html
reorientAndMergeLGs html
show-ContigOrdering-method html
show-LibraryGroupList-method html
show-LinkageGroupList-method html
show-OrientationFrame-method html
show-StrandFreqMatrix-method html
show-StrandReadMatrix-method html
show-StrandStateList-method html
show-StrandStateMatrix-method html
strandSeqFreqTable html
thoroughBed html
writeBed html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'contiBAIT'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'contiBAIT' as contiBAIT_1.23.1.zip
* DONE (contiBAIT)