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This page was generated on 2022-03-18 11:08:43 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SLGI on riesling1


To the developers/maintainers of the SLGI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SLGI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1825/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SLGI 1.55.1  (landing page)
Nolwenn Le Meur
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/SLGI
git_branch: master
git_last_commit: dc93f14
git_last_commit_date: 2022-01-10 10:27:08 -0400 (Mon, 10 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  NO, package depends on 'ScISI' which is not available
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'ScISI' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'ScISI' which is not available

Summary

Package: SLGI
Version: 1.55.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SLGI
StartedAt: 2022-03-17 16:04:18 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:05:32 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 74.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SLGI
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SLGI' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16 
2: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16 
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
  converting help for package 'SLGI'
    finding HTML links ... done
    Atong                                   html  
    AtongFnDomain                           html  
    AtongPair                               html  
    Boeke                                   html  
    SDL                                     html  
    SGA                                     html  
    SGD.SL                                  html  
    TFmat                                   html  
    byComplex                               html  
    comemberIn                              html  
    compare                                 html  
    congruence                              html  
    createSquareMatrix                      html  
    dSLAM.GPL1444                           html  
    domainDist                              html  
    essglist                                html  
    getInteraction                          html  
    getSharedDomains                        html  
    getSharedInteraction                    html  
    getTestedPairs                          html  
    getUniquePairs                          html  
    gi2005                                  html  
    gi2007                                  html  
    gi2Interactome                          html  
    hyperG                                  html  
    iSummary                                html  
    modelSLGI                               html  
    normInteraction                         html  
    plot                                    html  
    seqMatcherAlign                         html  
    sharedBy                                html  
    sharedInt                               html  
    siResult-class                          html  
    test2Interact                           html  
    topInteraction                          html  
    twoWayTable                             html  
    withinComplex                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
Warning: Package 'SLGI' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package can be loaded from final location
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
  version 3.16
Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
  version 3.16
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
Warning: Package 'SLGI' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (SLGI)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'RTN' is missing or broken
 done