Package: xmapbridge

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes xmapbridge_1.0.0.tar.gz

StartedAt: 2009-04-18 18:35:39 -0700 (Sat, 18 Apr 2009)

EndedAt: 2009-04-18 18:36:06 -0700 (Sat, 18 Apr 2009)

EllapsedTime: 26.8 seconds

RetCode: 0

Status: OK

CheckDir: xmapbridge.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/xmapbridge.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'xmapbridge/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'xmapbridge' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xmapbridge' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating xmapbridge-Ex.R ... OK
* checking examples ... OK
* checking tests ...
  Running 'xmapbridge_test.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating xmapbridge-manual.tex ... OK
* checking xmapbridge-manual.tex using pdflatex ... OK

* Installing *source* package 'xmapbridge' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic for "show" in package  "xmapbridge"
    (the supplied definition differs from and overrides the implicit generic in package "methods": Signatures differ:  (object), (object))
** help
 >>> Building/Updating help pages for package 'xmapbridge'
     Formats: text html latex example 
  exon.data                         text    html    latex
  xmap.col                          text    html    latex   example
  xmap.files                        text    html    latex   example
  xmap.plot                         text    html    latex   example
  xmapbridge-internal               text    html    latex
  xmapbridge-package                text    html    latex
** building package indices ...
* DONE (xmapbridge)