siggenes 1.16.0
Holger Schwender
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/siggenes | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/siggenes.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildSNPannotation: no visible global function definition for 'db'
buildSNPannotation: no visible global function definition for
'dbListFields'
buildSNPannotation: no visible global function definition for
'dbGetQuery'
filterALL: no visible global function definition for 'filterALL2'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating siggenes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating siggenes-manual.tex ... OK
* checking siggenes-manual.tex using pdflatex ... OK
* Installing *source* package 'siggenes' ...
** R
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
** help
>>> Building/Updating help pages for package 'siggenes'
Formats: text html latex example
EBAM-class text html latex example
FindA0-class text html latex
SAM-class text html latex example
buildSNPannotation text html latex
cat.ebam text html latex
cat.stat text html latex
d.stat text html latex
delta.plot text html latex example
denspr text html latex
ebam text html latex example
find.a0 text html latex example
findDelta text html latex
fudge2 text html latex
help.ebam text html latex example
help.finda0 text html latex example
help.sam text html latex example
link.genes text html latex
link.siggenes text html latex
list.siggenes text html latex example
nclass.wand text html latex
pi0.est text html latex example
plotArguments text html latex
plotFindArguments text html latex
qvalue.cal text html latex example
rowWilcoxon text html latex
sam text html latex example
sam.plot2 text html latex example
shortenGeneDescription text html latex
siggenes-internal text html latex
siggenes2excel text html latex
siggenes2html text html latex
sumSAM-class text html latex
wilc.ebam text html latex
wilc.stat text html latex
z.ebam text html latex
** building package indices ...
* DONE (siggenes)