siggenes 1.16.0
Holger Schwender
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/siggenes | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/siggenes.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildSNPannotation: no visible global function definition for 'db'
buildSNPannotation: no visible global function definition for
'dbListFields'
buildSNPannotation: no visible global function definition for
'dbGetQuery'
filterALL: no visible global function definition for 'filterALL2'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating siggenes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating siggenes-manual.tex ... OK
* checking siggenes-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/siggenes.Rcheck
---------- Making package siggenes ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package siggenes for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'siggenes'
Formats: text html latex example chm
EBAM-class text html latex example chm
FindA0-class text html latex chm
SAM-class text html latex example chm
buildSNPannotation text html latex chm
cat.ebam text html latex chm
cat.stat text html latex chm
d.stat text html latex chm
delta.plot text html latex example chm
denspr text html latex chm
ebam text html latex example chm
find.a0 text html latex example chm
findDelta text html latex chm
fudge2 text html latex chm
help.ebam text html latex example chm
help.finda0 text html latex example chm
help.sam text html latex example chm
link.genes text html latex chm
link.siggenes text html latex chm
list.siggenes text html latex example chm
nclass.wand text html latex chm
pi0.est text html latex example chm
plotArguments text html latex chm
plotFindArguments text html latex chm
qvalue.cal text html latex example chm
rowWilcoxon text html latex chm
sam text html latex example chm
sam.plot2 text html latex example chm
shortenGeneDescription text html latex chm
siggenes-internal text html latex chm
siggenes2excel text html latex chm
siggenes2html text html latex chm
sumSAM-class text html latex chm
wilc.ebam text html latex chm
wilc.stat text html latex chm
z.ebam text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\siggenes.Rcheck\00_pkg_src\siggenes\chm\siggenes.chm
Compile time: 0 minutes, 0 seconds
36 Topics
232 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\siggenes.Rcheck\00_pkg_src\siggenes\chm\siggenes.chm, 95,259 bytes
Compression decreased file by 132,321 bytes.
adding MD5 sums
* DONE (siggenes)