minet 1.2.0
Patrick E. Meyer
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/minet | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.3-bioc/meat/minet.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: UTF-8
* checking for file 'minet/DESCRIPTION' ... OK
* this is package 'minet' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'minet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating minet-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating minet-manual.tex ... OK
* checking minet-manual.tex using pdflatex ... OK
* Installing *source* package 'minet' ...
** libs
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c aracne.cpp -o aracne.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c clr.cpp -o clr.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c disc.cpp -o disc.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c mim.cpp -o mim.o
mim.cpp: In function ‘double minformation(const double*, int, int, int, int, char)’:
mim.cpp:101: warning: ‘Hij’ may be used uninitialized in this function
mim.cpp:101: warning: ‘Hj’ may be used uninitialized in this function
mim.cpp:101: warning: ‘Hi’ may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c minet.cpp -o minet.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c mrnet.cpp -o mrnet.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c symmetrize.cpp -o symmetrize.o
g++ -I/home/biocbuild/bbs-2.3-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c validate.cpp -o validate.o
g++ -shared -L/usr/local/lib64 -o minet.so aracne.o clr.o disc.o mim.o minet.o mrnet.o symmetrize.o validate.o -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'minet'
Formats: text html latex example
aracne.net text html latex example
build.mim text html latex example
clr.net text html latex example
disc text html latex example
minet text html latex example
mr.net text html latex example
norm text html latex example
syn.data text html latex example
syn.net text html latex example
validate text html latex example
vis.res text html latex example
** building package indices ...
* DONE (minet)