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Package 178/294HostnameOS / ArchBUILDCHECKBUILD BIN
minet 1.2.0
Patrick E. Meyer
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/minet
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: minet
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes minet_1.2.0.tar.gz
StartedAt: 2009-04-18 19:24:22 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:24:58 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 36.0 seconds
RetCode: 0
Status: OK
CheckDir: minet.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/minet.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'minet/DESCRIPTION' ... OK
* this is package 'minet' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'minet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating minet-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating minet-manual.tex ... OK
* checking minet-manual.tex using pdflatex ... OK

minet.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/minet.Rcheck


---------- Making package minet ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making aracne.d from aracne.cpp
making clr.d from clr.cpp
making disc.d from disc.cpp
making mim.d from mim.cpp
making minet.d from minet.cpp
making mrnet.d from mrnet.cpp
making symmetrize.d from symmetrize.cpp
making validate.d from validate.cpp
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c aracne.cpp -o aracne.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c clr.cpp -o clr.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c disc.cpp -o disc.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c mim.cpp -o mim.o
mim.cpp: In function 'double minformation(const double*, int, int, int, int, char)':
mim.cpp:101: warning: 'Hij' may be used uninitialized in this function
mim.cpp:101: warning: 'Hj' may be used uninitialized in this function
mim.cpp:101: warning: 'Hi' may be used uninitialized in this function
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c minet.cpp -o minet.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c mrnet.cpp -o mrnet.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c symmetrize.cpp -o symmetrize.o
g++   -Ie:/biocbld/bbs-2.3-bioc/R/include     -O2 -Wall  -c validate.cpp -o validate.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i minet_res.rc -o minet_res.o
g++   -shared -s  -o minet.dll minet.def aracne.o clr.o disc.o mim.o minet.o mrnet.o symmetrize.o validate.o minet_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing demos
  installing inst files
  installing data files
  preparing package minet for lazy loading
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'minet'
     Formats: text html latex example chm 
  aracne.net                        text    html    latex   example chm
  build.mim                         text    html    latex   example chm
  clr.net                           text    html    latex   example chm
  disc                              text    html    latex   example chm
  minet                             text    html    latex   example chm
  mr.net                            text    html    latex   example chm
  norm                              text    html    latex   example chm
  syn.data                          text    html    latex   example chm
  syn.net                           text    html    latex   example chm
  validate                          text    html    latex   example chm
  vis.res                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\minet.Rcheck\00_pkg_src\minet\chm\minet.chm


Compile time: 0 minutes, 0 seconds
12	Topics
61	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\minet.Rcheck\00_pkg_src\minet\chm\minet.chm, 31,572 bytes
Compression decreased file by 9,767 bytes.
  adding MD5 sums

* DONE (minet)