biomaRt 1.16.0
Steffen Durinck
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/biomaRt | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/biomaRt.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'biomaRt/DESCRIPTION' ... OK
* this is package 'biomaRt' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biomaRt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getBM: no visible global function definition for 'dbGetQuery'
getHomolog: no visible global function definition for 'dbGetQuery'
getSNP: no visible global function definition for 'dbGetQuery'
getSequence: no visible global function definition for 'dbConnect'
getSequence: no visible global function definition for 'dbGetQuery'
listDatasets: no visible global function definition for 'dbGetQuery'
listMarts: no visible global function definition for 'dbDriver'
listMarts: no visible global function definition for 'dbConnect'
listMarts: no visible global function definition for 'dbGetQuery'
listMarts: no visible global function definition for 'dbDisconnect'
martDisconnect: no visible global function definition for
'dbDisconnect'
useDataset: no visible global function definition for 'dbGetQuery'
useMart: no visible global function definition for 'dbDriver'
useMart: no visible global function definition for 'dbConnect'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biomaRt-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biomaRt-manual.tex ... OK
* checking biomaRt-manual.tex using pdflatex ... OK
* Installing *source* package 'biomaRt' ...
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'biomaRt'
Formats: text html latex example
Mart-class text html latex
attributeSummary text html latex example
exportFASTA text html latex example
filterOptions text html latex example
filterSummary text html latex example
filterType text html latex example
getAffyArrays text html latex example
getBM text html latex example
getGO text html latex example
getGene text html latex example
getHomolog text html latex example
getLDS text html latex example
getSNP text html latex example
getSequence text html latex example
listAttributes text html latex example
listDatasets text html latex example
listFilters text html latex example
Note: removing empty section \seealso in file 'listMarts.Rd'
listMarts text html latex example
martDisconnect text html latex example
parseAttributes text html latex
parseFilters text html latex
useDataset text html latex example
useMart text html latex example
** building package indices ...
* DONE (biomaRt)