biomaRt 1.16.0
Steffen Durinck
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/biomaRt | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/biomaRt.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'biomaRt/DESCRIPTION' ... OK
* this is package 'biomaRt' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biomaRt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getBM: no visible global function definition for 'dbGetQuery'
getHomolog: no visible global function definition for 'dbGetQuery'
getSequence: no visible global function definition for 'dbConnect'
getSequence: no visible global function definition for 'dbGetQuery'
getSNP: no visible global function definition for 'dbGetQuery'
listDatasets: no visible global function definition for 'dbGetQuery'
listMarts: no visible global function definition for 'dbDriver'
listMarts: no visible global function definition for 'dbConnect'
listMarts: no visible global function definition for 'dbGetQuery'
listMarts: no visible global function definition for 'dbDisconnect'
martDisconnect: no visible global function definition for
'dbDisconnect'
useDataset: no visible global function definition for 'dbGetQuery'
useMart: no visible global function definition for 'dbDriver'
useMart: no visible global function definition for 'dbConnect'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biomaRt-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biomaRt-manual.tex ... OK
* checking biomaRt-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/biomaRt.Rcheck
---------- Making package biomaRt ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package biomaRt for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'biomaRt'
Formats: text html latex example chm
Mart-class text html latex chm
attributeSummary text html latex example chm
exportFASTA text html latex example chm
filterOptions text html latex example chm
filterSummary text html latex example chm
filterType text html latex example chm
getAffyArrays text html latex example chm
getBM text html latex example chm
getGO text html latex example chm
getGene text html latex example chm
getHomolog text html latex example chm
getLDS text html latex example chm
getSNP text html latex example chm
getSequence text html latex example chm
listAttributes text html latex example chm
listDatasets text html latex example chm
listFilters text html latex example chm
Note: removing empty section \seealso in file 'listMarts.Rd'
Note: removing empty section \seealso in file 'listMarts.Rd'
listMarts text html latex example chm
martDisconnect text html latex example chm
parseAttributes text html latex chm
parseFilters text html latex chm
useDataset text html latex example chm
useMart text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\biomaRt.Rcheck\00_pkg_src\biomaRt\chm\biomaRt.chm
Compile time: 0 minutes, 0 seconds
24 Topics
47 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\biomaRt.Rcheck\00_pkg_src\biomaRt\chm\biomaRt.chm, 34,656 bytes
Compression decreased file by 29,387 bytes.
adding MD5 sums
* DONE (biomaRt)