BufferedMatrixMethods 1.6.0
B. M. Bolstad
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BufferedMatrixMethods | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrixMethods-Ex.R ... OK
* checking examples ... OK
* creating BufferedMatrixMethods-manual.tex ... OK
* checking BufferedMatrixMethods-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/BufferedMatrixMethods.Rcheck
---------- Making package BufferedMatrixMethods ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making init_package.d from init_package.c
making preprocess_bm.d from preprocess_bm.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/BufferedMatrix/include" -O3 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -I"e:/biocbld/bbs-2.3-bioc/R/library/BufferedMatrix/include" -O3 -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:343: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:377: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:592: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1150: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:452: warning: 'min' defined but not used
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i BufferedMatrixMethods_res.rc -o BufferedMatrixMethods_res.o
gcc -std=gnu99 -shared -s -o BufferedMatrixMethods.dll BufferedMatrixMethods.def init_package.o preprocess_bm.o BufferedMatrixMethods_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
preparing package BufferedMatrixMethods for lazy loading
Loading required package: BufferedMatrix
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'BufferedMatrixMethods'
Formats: text html latex example chm
BM_affyDataInput text html latex chm
BM_justRMA text html latex chm
BM_readcelfiles text html latex chm
rmapreprocess.bufferedmatrix text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\BufferedMatrixMethods.Rcheck\00_pkg_src\BufferedMatrixMethods\chm\BufferedMatrixMethods.chm
Compile time: 0 minutes, 3 seconds
5 Topics
14 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\BufferedMatrixMethods.Rcheck\00_pkg_src\BufferedMatrixMethods\chm\BufferedMatrixMethods.chm, 19,878 bytes
Compression decreased file by 1,996 bytes.
adding MD5 sums
* DONE (BufferedMatrixMethods)