ArrayTools 1.2.1
Arthur Li
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ArrayTools | | Last Changed Rev: 36980 / Revision: 38965 | | Last Changed Date: 2009-01-27 09:39:25 -0800 (Tue, 27 Jan 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/ArrayTools.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'ArrayTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ArrayTools' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ArrayTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
preProcessGeneST: no visible binding for global variable
'hugene10stCONTROL'
preProcessGeneST: no visible binding for global variable
'mogene10stCONTROL'
regress: no visible global function definition for 'permute.1'
regress: no visible binding for global variable 'design'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ArrayTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ArrayTools-manual.tex ... OK
* checking ArrayTools-manual.tex using pdflatex ... OK
* Installing *source* package 'ArrayTools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: xtable
Creating a new generic function for "summary" in "ArrayTools"
** help
>>> Building/Updating help pages for package 'ArrayTools'
Formats: text html latex example
Output2HTML text html latex example
QC text html latex example
Sort text html latex example
adjustment text html latex
contrastMatrix-class text html latex example
createExpressionSet text html latex example
createGSEAFiles text html latex example
createIndex text html latex example
createIngenuityFile text html latex example
designMatrix-class text html latex example
eSetExample text html latex example
exprsExample text html latex example
geneFilter text html latex example
getAdjP text html latex
getAnnotation text html latex
getCompare1 text html latex
getCompare2 text html latex
getContrast text html latex
getCovariates text html latex
getDesign text html latex
getF text html latex
getFC text html latex
getFCCutoff text html latex
getFilterMethod text html latex
getID text html latex
getIndex text html latex
getIntIndex text html latex
getInteraction text html latex
getLength text html latex
getLevel text html latex
getNormalizationMethod text html latex
getP text html latex
getPCutoff text html latex
getTarget text html latex
hugene10stCONTROL text html latex
interactionResult-class text html latex example
mogene10stCONTROL text html latex
output.cls text html latex
output.gct text html latex
output.ing text html latex
pDataExample text html latex example
postInteraction text html latex example
preProcess3prime text html latex example
preProcessGeneST text html latex example
qa3prime text html latex example
qaGeneST text html latex example
regress text html latex example
regressResult-class text html latex example
regressionMethod text html latex
selectSigGene text html latex example
selectSigGeneInt text html latex example
** building package indices ...
* DONE (ArrayTools)