ArrayTools 1.2.1
Arthur Li
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/ArrayTools | | Last Changed Rev: 36980 / Revision: 38965 | | Last Changed Date: 2009-01-27 09:39:25 -0800 (Tue, 27 Jan 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/ArrayTools.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ArrayTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ArrayTools' version '1.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ArrayTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
preProcessGeneST: no visible binding for global variable
'hugene10stCONTROL'
preProcessGeneST: no visible binding for global variable
'mogene10stCONTROL'
regress: no visible global function definition for 'permute.1'
regress: no visible binding for global variable 'design'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ArrayTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ArrayTools-manual.tex ... OK
* checking ArrayTools-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/ArrayTools.Rcheck
---------- Making package ArrayTools ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package ArrayTools for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: xtable
Creating a new generic function for "summary" in "ArrayTools"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'ArrayTools'
Formats: text html latex example chm
Output2HTML text html latex example chm
QC text html latex example chm
Sort text html latex example chm
adjustment text html latex chm
contrastMatrix-class text html latex example chm
createExpressionSet text html latex example chm
createGSEAFiles text html latex example chm
createIndex text html latex example chm
createIngenuityFile text html latex example chm
designMatrix-class text html latex example chm
eSetExample text html latex example chm
exprsExample text html latex example chm
geneFilter text html latex example chm
getAdjP text html latex chm
getAnnotation text html latex chm
getCompare1 text html latex chm
getCompare2 text html latex chm
getContrast text html latex chm
getCovariates text html latex chm
getDesign text html latex chm
getF text html latex chm
getFC text html latex chm
getFCCutoff text html latex chm
getFilterMethod text html latex chm
getID text html latex chm
getIndex text html latex chm
getIntIndex text html latex chm
getInteraction text html latex chm
getLength text html latex chm
getLevel text html latex chm
getNormalizationMethod text html latex chm
getP text html latex chm
getPCutoff text html latex chm
getTarget text html latex chm
hugene10stCONTROL text html latex chm
interactionResult-class text html latex example chm
mogene10stCONTROL text html latex chm
output.cls text html latex chm
output.gct text html latex chm
output.ing text html latex chm
pDataExample text html latex example chm
postInteraction text html latex example chm
preProcess3prime text html latex example chm
preProcessGeneST text html latex example chm
qa3prime text html latex example chm
qaGeneST text html latex example chm
regress text html latex example chm
regressResult-class text html latex example chm
regressionMethod text html latex chm
selectSigGene text html latex example chm
selectSigGeneInt text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\ArrayTools.Rcheck\00_pkg_src\ArrayTools\chm\ArrayTools.chm
Compile time: 0 minutes, 0 seconds
52 Topics
215 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\ArrayTools.Rcheck\00_pkg_src\ArrayTools\chm\ArrayTools.chm, 53,627 bytes
Compression decreased file by 104,872 bytes.
adding MD5 sums
* DONE (ArrayTools)