BioC experimental data: CHECK report for miRNATarget on perceval

Package: miRNATarget

Version: 1.1.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.1.2.tar.gz

StartedAt: 2014-04-04 11:23:22 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 11:25:58 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 155.3 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [3s/7s] OK
* checking installed package size ... NOTE
  installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.031	0.004	0.035
HS_refseq_to_affy_hc_g110	0.012	0.002	0.015
HS_refseq_to_affy_hg_focus	0.040	0.005	0.044
HS_refseq_to_affy_hg_u133_plus_2	0.221	0.009	0.230
HS_refseq_to_affy_hg_u133a	0.093	0.004	0.098
HS_refseq_to_affy_hg_u133a_2	0.080	0.005	0.083
HS_refseq_to_affy_hg_u133b	0.048	0.004	0.053
HS_refseq_to_affy_hg_u95a	0.056	0.004	0.061
HS_refseq_to_affy_hg_u95av2	0.059	0.004	0.062
HS_refseq_to_affy_hg_u95b	0.044	0.004	0.049
HS_refseq_to_affy_hg_u95c	0.036	0.004	0.039
HS_refseq_to_affy_hg_u95d	0.029	0.003	0.032
HS_refseq_to_affy_hg_u95e	0.033	0.004	0.135
HS_refseq_to_affy_huex_1_0_st_v2	2.567	0.091	2.657
HS_refseq_to_affy_hugene_1_0_st_v1	0.086	0.019	0.105
HS_refseq_to_affy_hugenefl	0.028	0.008	0.036
HS_refseq_to_affy_u133_x3p	0.141	0.011	0.151
HS_refseq_to_agilent_cgh_44b	0.052	0.009	0.061
HS_refseq_to_agilent_wholegenome	0.087	0.009	0.096
HS_refseq_to_canonical_transcript_stable_id	0.083	0.011	0.095
HS_refseq_to_ccds	0.063	0.008	0.071
HS_refseq_to_codelink	0.073	0.019	0.092
HS_refseq_to_embl	0.460	0.028	0.488
HS_refseq_to_ensembl_gene_id	0.122	0.011	0.132
HS_refseq_to_ensembl_peptide_id	0.154	0.014	0.167
HS_refseq_to_ensembl_transcript_id	0.159	0.012	0.170
HS_refseq_to_entrezgene	0.128	0.015	0.142
HS_refseq_to_hgnc_id	0.122	0.015	0.136
HS_refseq_to_hgnc_symbol	0.192	0.007	0.199
HS_refseq_to_hgnc_transcript_name	0.113	0.023	0.135
HS_refseq_to_illumina_humanht_12	0.105	0.010	0.114
HS_refseq_to_illumina_humanwg_6_v1	0.088	0.011	0.099
HS_refseq_to_illumina_humanwg_6_v2	0.162	0.017	0.178
HS_refseq_to_illumina_humanwg_6_v3	0.161	0.018	0.180
HS_refseq_to_interpro	0.223	0.012	0.235
HS_refseq_to_ipi	0.197	0.012	0.209
HS_refseq_to_merops	0.007	0.003	0.010
HS_refseq_to_pdb	0.057	0.015	0.072
HS_refseq_to_pfam	0.130	0.013	0.143
HS_refseq_to_phalanx_onearray	0.138	0.011	0.149
HS_refseq_to_protein_id	0.473	0.023	0.495
HS_refseq_to_refseq_dna	0.080	0.010	0.091
HS_refseq_to_refseq_genomic	0.004	0.004	0.008
HS_refseq_to_refseq_peptide	0.097	0.014	0.111
HS_refseq_to_rfam	0.018	0.005	0.023
HS_refseq_to_rfam_gene_name	0.017	0.004	0.022
HS_refseq_to_rfam_transcript_name	0.017	0.005	0.021
HS_refseq_to_smart	0.056	0.007	0.063
HS_refseq_to_tigrfam	0.009	0.006	0.014
HS_refseq_to_ucsc	0.092	0.010	0.102
HS_refseq_to_unigene	0.105	0.009	0.115
HS_refseq_to_uniprot_genename	0.106	0.012	0.118
HS_refseq_to_wikigene_name	0.077	0.011	0.088
MM_conv_id	0.005	0.003	0.009
MM_refseq_to_affy_mg_u74a	0.029	0.013	0.042
MM_refseq_to_affy_mg_u74av2	0.031	0.005	0.036
MM_refseq_to_affy_mg_u74b	0.029	0.009	0.039
MM_refseq_to_affy_mg_u74bv2	0.025	0.008	0.034
MM_refseq_to_affy_mg_u74c	0.009	0.010	0.019
MM_refseq_to_affy_mg_u74cv2	0.013	0.004	0.017
MM_refseq_to_affy_moe430a	0.068	0.010	0.077
MM_refseq_to_affy_moe430b	0.039	0.010	0.049
MM_refseq_to_affy_moex_1_0_st_v1	0.738	0.043	0.780
MM_refseq_to_affy_mogene_1_0_st_v1	0.104	0.010	0.115
MM_refseq_to_affy_mouse430_2	0.151	0.011	0.161
MM_refseq_to_affy_mouse430a_2	0.087	0.009	0.096
MM_refseq_to_affy_mu11ksuba	0.046	0.009	0.055
MM_refseq_to_affy_mu11ksubb	0.016	0.005	0.020
MM_refseq_to_agilent_wholegenome	0.074	0.020	0.094
MM_refseq_to_canonical_transcript_stable_id	0.071	0.008	0.080
MM_refseq_to_ccds	0.098	0.022	0.120
MM_refseq_to_codelink	0.098	0.017	0.114
MM_refseq_to_embl	0.303	0.016	0.319
MM_refseq_to_ensembl_gene_id	0.171	0.012	0.183
MM_refseq_to_ensembl_peptide_id	0.289	0.013	0.301
MM_refseq_to_ensembl_transcript_id	0.071	0.012	0.083
MM_refseq_to_entrezgene	0.066	0.012	0.079
MM_refseq_to_fantom	0.088	0.019	0.108
MM_refseq_to_illumina_mousewg_6_v1	0.083	0.008	0.091
MM_refseq_to_illumina_mousewg_6_v2	0.090	0.008	0.100
MM_refseq_to_interpro	0.137	0.015	0.152
MM_refseq_to_ipi	0.093	0.012	0.104
MM_refseq_to_merops	0.007	0.003	0.010
MM_refseq_to_mgi_id	0.067	0.010	0.077
MM_refseq_to_mgi_symbol	0.068	0.013	0.081
MM_refseq_to_mgi_transcript_name	0.073	0.022	0.095
MM_refseq_to_pdb	0.010	0.005	0.014
MM_refseq_to_pfam	0.070	0.016	0.087
MM_refseq_to_phalanx_onearray	0.102	0.008	0.110
MM_refseq_to_protein_id	0.274	0.022	0.297
MM_refseq_to_refseq_dna	0.063	0.007	0.070
MM_refseq_to_refseq_peptide	0.130	0.010	0.139
MM_refseq_to_rfam	0.004	0.002	0.006
MM_refseq_to_rfam_gene_name	0.056	0.002	0.058
MM_refseq_to_rfam_transcript_name	0.141	0.005	0.146
MM_refseq_to_smart	0.089	0.018	0.107
MM_refseq_to_tigrfam	0.048	0.009	0.057
MM_refseq_to_ucsc	0.101	0.014	0.115
MM_refseq_to_unigene	0.136	0.011	0.147
MM_refseq_to_uniprot_genename	0.089	0.007	0.097
MM_refseq_to_wikigene_name	0.071	0.008	0.079
TBL2	1.658	0.131	1.789
TBL2_HS	2.919	0.295	3.214
TBL2_MM	1.346	0.209	1.556
conv_id	0.005	0.004	0.009
id_conv	0.063	0.006	0.069