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Package 70/631HostnameOS / ArchBUILDCHECKBUILD BIN
BiocParallel 0.0.9
Bioconductor Package Maintainer
Snapshot Date: 2013-01-15 17:01:14 -0800 (Tue, 15 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocParallel
Last Changed Rev: 71713 / Revision: 72575
Last Changed Date: 2012-12-06 14:19:06 -0800 (Thu, 06 Dec 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
lamb2 Linux (openSUSE 11.4) / x86_64 [ OK ] WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: BiocParallel
Version: 0.0.9
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
StartedAt: 2013-01-16 00:00:16 -0800 (Wed, 16 Jan 2013)
EndedAt: 2013-01-16 00:00:23 -0800 (Wed, 16 Jan 2013)
EllapsedTime: 6.8 seconds
RetCode: 0
Status:  OK 
PackageFile: BiocParallel_0.0.9.tar.gz
PackageFileSize: 131.6 KiB

Command output

* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-1.40.11 (TeX Live 2010)
 \write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, ancientgreek, ibycus, arabic, armenian
, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutch, u
kenglish, usenglishmax, esperanto, estonian, farsi, finnish, french, galician, 
german, ngerman, swissgerman, monogreek, greek, hungarian, icelandic, assamese,
 bengali, gujarati, hindi, kannada, malayalam, marathi, oriya, panjabi, tamil, 
telugu, indonesian, interlingua, irish, italian, kurmanji, lao, latin, latvian,
 lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, roma
nian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish,
 turkmen, ukrainian, uppersorbian, welsh, loaded.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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* hyperref using default driver hpdftex *
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Package hyperref Warning: Option `hyperindex' has already been used,
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Writing index file Rd2.idx
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/fi4/m/n/10 method?bplapply("MulticoreParam")\T1/
ptm/m/n/10 . 
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[]\T1/fi4/m/n/10 logical(1) \T1/ptm/m/n/10 in-di-cat-ing whether forked chil-dr
en will be ter-mi-nated be-fore \T1/fi4/m/n/10 bplapply
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
10 to a \T1/fi4/m/n/10 SnowParam
[11]
No file Rd2.ind.
[12] (./Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
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pdfTeX warning (dest): name{Rfn.makeCluster} has been referenced but does not e
xist, replaced by a fixed one

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ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pvec} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.mclapply} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.lapply} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.register} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.DoparParam} has been referenced but does not ex
ist, replaced by a fixed one

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t, replaced by a fixed one

{/usr/share/texmf/fonts/enc/dvips/base/8r.enc}{/usr/share/texmf/fonts/enc/dvips
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Output written on Rd2.pdf (12 pages, 103561 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2010] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (119 entries accepted, 1 rejected).
Sorting entries....done (821 comparisons).
Generating output file Rd2.ind....done (178 lines written, 0 warnings).
Output written in Rd2.ind.
Transcript written in Rd2.ilg.
This is pdfTeX, Version 3.1415926-1.40.11 (TeX Live 2010)
 \write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, ancientgreek, ibycus, arabic, armenian
, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutch, u
kenglish, usenglishmax, esperanto, estonian, farsi, finnish, french, galician, 
german, ngerman, swissgerman, monogreek, greek, hungarian, icelandic, assamese,
 bengali, gujarati, hindi, kannada, malayalam, marathi, oriya, panjabi, tamil, 
telugu, indonesian, interlingua, irish, italian, kurmanji, lao, latin, latvian,
 lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, roma
nian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish,
 turkmen, ukrainian, uppersorbian, welsh, loaded.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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Writing index file Rd2.idx
(./Rd2.aux) (/usr/share/texmf/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/psnfss/t1ptm.fd)
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(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty)) (./Rd2.out)
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(/usr/share/texmf/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
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LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font)              using `T1/fi4/m/n' instead on input line 19.


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 )
(see the transcript file for additional information)pdfTeX warning (dest): name
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xist, replaced by a fixed one

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ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.pvec} has been referenced but does not exist, r
eplaced by a fixed one

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t, replaced by a fixed one

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 replaced by a fixed one

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t, replaced by a fixed one

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ist, replaced by a fixed one

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t, replaced by a fixed one

{/usr/share/texmf/fonts/enc/dvips/base/8r.enc}{/usr/share/texmf/fonts/enc/dvips
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Output written on Rd2.pdf (14 pages, 120867 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2010] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (119 entries accepted, 1 rejected).
Sorting entries....done (820 comparisons).
Generating output file Rd2.ind....done (182 lines written, 0 warnings).
Output written in Rd2.ind.
Transcript written in Rd2.ilg.
This is pdfTeX, Version 3.1415926-1.40.11 (TeX Live 2010)
 \write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, ancientgreek, ibycus, arabic, armenian
, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutch, u
kenglish, usenglishmax, esperanto, estonian, farsi, finnish, french, galician, 
german, ngerman, swissgerman, monogreek, greek, hungarian, icelandic, assamese,
 bengali, gujarati, hindi, kannada, malayalam, marathi, oriya, panjabi, tamil, 
telugu, indonesian, interlingua, irish, italian, kurmanji, lao, latin, latvian,
 lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, polish, portuguese, roma
nian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish,
 turkmen, ukrainian, uppersorbian, welsh, loaded.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
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