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Package 74/672HostnameOS / ArchBUILDCHECKBUILD BIN
BiocParallel 0.2.0
Bioconductor Package Maintainer
Snapshot Date: 2013-04-03 17:01:30 -0700 (Wed, 03 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BiocParallel
Last Changed Rev: 75263 / Revision: 75273
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: BiocParallel
Version: 0.2.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings BiocParallel_0.2.0.tar.gz
StartedAt: 2013-04-04 02:55:00 -0700 (Thu, 04 Apr 2013)
EndedAt: 2013-04-04 02:55:48 -0700 (Thu, 04 Apr 2013)
EllapsedTime: 48.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: BiocParallel.Rcheck
Warnings: 2

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/BiocParallel.Rcheck’
* using R version 3.0.0 (2013-04-03)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BiocParallel’ version ‘0.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocParallel’ can be installed ... [2s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object ‘/home/biocbuild/bbs-2.12-bioc/meat/BiocParallel.Rcheck/00_pkg_src/BiocParallel/man/bpcontrols.Rd’:
  ‘DoparParam’

Missing link or links in documentation object ‘/home/biocbuild/bbs-2.12-bioc/meat/BiocParallel.Rcheck/00_pkg_src/BiocParallel/man/bpschedule.Rd’:
  ‘DoparParam’

Missing link or links in documentation object ‘/home/biocbuild/bbs-2.12-bioc/meat/BiocParallel.Rcheck/00_pkg_src/BiocParallel/man/register.Rd’:
  ‘DoparParam’

See the information in section ‘Cross-references’ of the ‘Writing R
Extensions’ manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘DoparParam’
Undocumented S4 classes:
  ‘DoparParam’
Undocumented S4 methods:
  generic 'bpisup' and siglist 'DoparParam'
  generic 'bplapply' and siglist 'ANY,DoparParam'
  generic 'bpworkers' and siglist 'DoparParam'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [2s/4s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’ [2s/8s]
 [3s/8s] OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/BiocParallel.Rcheck/00check.log’
for details.

BiocParallel.Rcheck/00install.out:

* installing *source* package ‘BiocParallel’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BiocParallel)

BiocParallel.Rcheck/BiocParallel-Ex.timings:

nameusersystemelapsed
AllClasses0.0120.0000.012
MulticoreParam-class0.0480.1120.169
SerialParam-class0.0120.0000.013
SnowParam-class0.0280.0162.154
bpcontrols0.0240.0000.022
bplapply0.1400.1480.230
bpschedule0.0280.0200.060
bpvec0.0840.0520.141
bpvectorize0.0280.1080.062
register0.0200.0040.021