Package: iSNetwork

Version: 1.6.0

Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check iSNetwork_1.6.0.tar.gz

RetCode: 0

Time: 65.0 seconds

Status: WARNINGS

CheckDir: iSNetwork.Rcheck

Warnings: 7

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.0-bioc/meat/iSNetwork.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'iSNetwork/DESCRIPTION' ... OK
* this is package 'iSNetwork' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iSNetwork' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING

(R:9175): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING

(R:9224): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING

(R:9292): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING

(R:9379): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING

(R:9700): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING

(R:9793): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed

(R:9826): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed

(R:9829): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
* checking Rd \usage sections ... OK
* creating iSNetwork-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
(R:9841): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
* creating iSNetwork-manual.tex ... OK
* checking iSNetwork-manual.tex ... OK

WARNING: There were 7 warnings, see
  /home/biocbuild/bbs-2.0-bioc/meat/iSNetwork.Rcheck/00check.log
for details

* Installing *source* package 'iSNetwork' ...
** R
** inst
** save image
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: RGtk

(R:8265): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed
Loading required package: gtkDevice
Loading required package: BioMVCClass
Loading required package: MVCClass
Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead 
2: The exprSet class is deprecated, use ExpressionSet instead 
** help
 >>> Building/Updating help pages for package 'iSNetwork'
     Formats: text html latex example 
  addCBFunction                     text    html    latex   example
  addMenuItem                       text    html    latex   example
  addNewChildMethod                 text    html    latex   example
  addToKeyVals                      text    html    latex   example
  clickEvent-methods                text    html    latex
  createChrLocGSE                   text    html    latex   example
  createControlWindow               text    html    latex   example
  createGoGraph                     text    html    latex   example
  createGraphPlot                   text    html    latex   example
  createHeatmap                     text    html    latex   example
  createKEGGGSE                     text    html    latex   example
  createModelGraph                  text    html    latex   example
  createQQplot                      text    html    latex   example
  createSPlot                       text    html    latex   example
  createSpreadsheet                 text    html    latex   example
  createSubset                      text    html    latex   example
  deleteMVC                         text    html    latex   example
  getActiveMVC                      text    html    latex   example
  getColor                          text    html    latex   example
  getData                           text    html    latex   example
  getHiddenValues                   text    html    latex   example
  getKeyVals                        text    html    latex   example
  getMVCFromWinNum                  text    html    latex   example
  getMVCList                        text    html    latex   example
  getMethodsToCreateChild           text    html    latex   example
  getModelNames                     text    html    latex   example
  getModelVar                       text    html    latex   example
  getNodeAttr                       text    html    latex   example
  getTooltips                       text    html    latex   example
  handleMessage-methods             text    html    latex
  heatmapNI                         text    html    latex   example
  identifyView-methods              text    html    latex
  initialize-methods                text    html    latex
  loadData                          text    html    latex   example
  loadModel                         text    html    latex   example
  loadModelVar                      text    html    latex   example
  motionEvent-methods               text    html    latex
  performMDS                        text    html    latex   example
  plotModelGraph                    text    html    latex   example
  provideInfo-methods               text    html    latex
  quitiSNetwork                     text    html    latex   example
  removeKeyVals                     text    html    latex   example
  resetWinSize                      text    html    latex   example
  setActiveMVC                      text    html    latex   example
  setCallFunc                       text    html    latex   example
  setChipType                       text    html    latex   example
  setColor                          text    html    latex   example
  setModelName                      text    html    latex   example
  setToggleX                        text    html    latex   example
  setTooltips                       text    html    latex   example
  showHiddenValues                  text    html    latex   example
  updateModel-methods               text    html    latex
  updateView-methods                text    html    latex
** building package indices ...
* DONE (iSNetwork)