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Package 172/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Rgraphviz1.14.0Li LongLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | ERROR | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | N O T S U P P O R T E D | |||
derby | Mac OS X (10.4.9) | i686 | ERROR | skipped |
Package: Rgraphviz |
Version: 1.14.0 |
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check Rgraphviz_1.14.0.tar.gz |
RetCode: 0 |
Time: 122.5 seconds |
Status: OK |
CheckDir: Rgraphviz.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.0-bioc/meat/Rgraphviz.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'Rgraphviz/DESCRIPTION' ... OK * this is package 'Rgraphviz' version '1.14.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Rgraphviz' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating Rgraphviz-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Rgraphviz-manual.tex ... OK * checking Rgraphviz-manual.tex ... OK
Rgraphviz.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/Rgraphviz.Rcheck ---------- Making package Rgraphviz ------------ ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making LL_funcs.d from LL_funcs.c making Rgraphviz.d from Rgraphviz.c making RgraphvizInit.d from RgraphvizInit.c making agopen.d from agopen.c making agread.d from agread.c making agwrite.d from agwrite.c making bezier.d from bezier.c making buildEdgeList.d from buildEdgeList.c making buildNodeList.d from buildNodeList.c making doLayout.d from doLayout.c making graphvizVersion.d from graphvizVersion.c making init.d from init.c gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c LL_funcs.c -o LL_funcs.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from LL_funcs.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from LL_funcs.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c Rgraphviz.c -o Rgraphviz.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from Rgraphviz.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from Rgraphviz.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c RgraphvizInit.c -o RgraphvizInit.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from RgraphvizInit.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from RgraphvizInit.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c agopen.c -o agopen.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from agopen.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from agopen.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c agread.c -o agread.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from agread.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from agread.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c agwrite.c -o agwrite.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from agwrite.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from agwrite.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c bezier.c -o bezier.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from bezier.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from bezier.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c buildEdgeList.c -o buildEdgeList.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from buildEdgeList.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from buildEdgeList.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c buildNodeList.c -o buildNodeList.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from buildNodeList.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from buildNodeList.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c doLayout.c -o doLayout.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from doLayout.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from doLayout.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition doLayout.c: In function `getEdgeLocs': doLayout.c:34: warning: unused variable `tmp_ed' gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c graphvizVersion.c -o graphvizVersion.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from graphvizVersion.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from graphvizVersion.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition gcc -I../graphviz-win32/include -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=2 -DWin32 -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c init.c -o init.o In file included from ../graphviz-win32/include/render.h:53, from common.h:19, from init.c:1: ../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined In file included from common.h:5, from init.c:1: d:/biocbld/bbs-2.0-bioc/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition windres -I d:/biocbld/bbs-2.0-bioc/R/include -i Rgraphviz_res.rc -o Rgraphviz_res.o gcc -shared -s -o Rgraphviz.dll Rgraphviz.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o Rgraphviz_res.o -Ld:/biocbld/bbs-2.0-bioc/R/bin -L../graphviz-win32/lib -ldotgen -ltwopigen -lcircogen -lneatogen -lpack -lcommon -lpathplan -lgvrender -lgvgd -lgraph -lagraph -lcdt -lR ... DLL made installing DLL installing R files save image Loading required package: graph Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: geneplotter Loading required package: annotate Loading required package: lattice KernSmooth 2.22 installed Copyright M. P. Wand 1997 Creating a new generic function for "lines" in "Rgraphviz" Creating a new generic function for "plot" in "Rgraphviz" installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'Rgraphviz' Formats: text html latex example chm AgEdge-class text html latex example chm AgNode-class text html latex example chm AgTextLabel-class text html latex example chm BezierCurve-class text html latex example chm GraphvizAttributes text html latex example chm GraphvizLayouts text html latex example chm Ragraph-class text html latex example chm agopen text html latex example chm agopenSimple text html latex example chm agwrite text html latex example chm boundingBox-class text html latex example chm buildNodeList text html latex example chm clusterData-methods text html latex example chm getDefaultAttrs text html latex example chm graphData-methods text html latex chm graphDataDefaults-methods text html latex chm graphvizVersion text html latex example chm imageMap text html latex example chm layoutGraph text html latex example chm makeNodeAttrs text html latex example chm pEdge-class text html latex example chm pNode-class text html latex example chm pieGlyph text html latex example chm plot-methods text html latex example chm removedEdges text html latex example chm toDot-methods text html latex example chm toFile text html latex example chm xyPoint-class text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.0-bioc\meat\Rgraphviz.Rcheck\00_pkg_src\Rgraphviz\chm\Rgraphviz.chm Compile time: 0 minutes, 0 seconds 29 Topics 280 Local links 6 Internet links 1 Graphic Created d:\biocbld\bbs-2.0-bioc\meat\Rgraphviz.Rcheck\00_pkg_src\Rgraphviz\chm\Rgraphviz.chm, 79,730 bytes Compression decreased file by 117,309 bytes. adding MD5 sums * DONE (Rgraphviz)