Package: Rgraphviz

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build Rgraphviz

RetCode: 1

Time: 9.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Rgraphviz' ...
configure: No --with-graphviz option was specified. Trying to find graphviz using other methods.
checking for pkg-config... /opt/local/bin/pkg-config
configure: Found graphviz 2.8
configure: We have inferred the following flags for graphviz
configure: ..PKG_CPPFLAGS=-I/usr/local/include/graphviz  
configure: ..PKG_LIBS=-L/usr/local/lib/graphviz -lgvc  
checking for whether compiler has bool... checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c LL_funcs.c -o LL_funcs.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c Rgraphviz.c -o Rgraphviz.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c RgraphvizInit.c -o RgraphvizInit.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c agopen.c -o agopen.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c agread.c -o agread.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c agwrite.c -o agwrite.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c bezier.c -o bezier.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c buildEdgeList.c -o buildEdgeList.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c buildNodeList.c -o buildNodeList.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c doLayout.c -o doLayout.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c graphvizVersion.c -o graphvizVersion.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include/graphviz    -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=8 -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c init.c -o init.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rgraphviz.so LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -L/usr/local/lib/graphviz -lgvc    -F/Library/Frameworks/R.framework/.. -framework R
ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/graphviz/libcdt.2.dylib referenced from: /usr/local/lib/graphviz/libgvc.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2)
ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/graphviz/libgraph.2.dylib referenced from: /usr/local/lib/graphviz/libgvc.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2)
ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/graphviz/libpathplan.2.dylib referenced from: /usr/local/lib/graphviz/libgvc.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2)
ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/graphviz/libgvgd.2.dylib referenced from: /usr/local/lib/graphviz/libgvc.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2)
ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/graphviz/libgcc_s.1.0.dylib referenced from: /usr/local/lib/graphviz/libgvc.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2)
ld: Undefined symbols:
_agerr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_aginitlib referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnodeattr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agsafeset referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agerrorf referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agerrors referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agedgeattr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfindattr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agget referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_aghtmlstr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agprotograph referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agraphattr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agread referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agseterr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agsetfile referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_Dtoset referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_agcontains referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfstedge referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfstnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfstout referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnxtedge referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnxtnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnxtout referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agstrdup referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agstrfree referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxbfree referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxbinit referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxbmore referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxbput referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_dtclose referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_dtopen referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_agclose referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agcopyattr referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agdelete referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agdictof referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agedge referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfindnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfindsubg referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_aginsert referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnnodes referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agsubg referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxget referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxset referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agfindedge referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agopen referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_dtflatten referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_aglstnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agprvnode referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_dtsize referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_agcanonical referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agset referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agwrite referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_agxbpop referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
_gdFontGiant referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdFontLarge referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdFontMediumBold referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdFontSmall referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdFontTiny referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageAlphaBlending referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageArc referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageColorResolveAlpha referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageColorTransparent referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCopyResized referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCreate referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCreateTrueColor referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageDestroy referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageFill referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageFilledEllipse referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageFilledPolygon referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageFilledRectangle referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageGd referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageGd2 referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageGif referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageJpeg referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageLine referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImagePaletteCopy referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImagePng referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImagePolygon referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageSaveAlpha referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageSetBrush referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageSetStyle referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageSetThickness referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageString referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageStringFTEx referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageTrueColorToPalette referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageWBMP referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageColorResolve referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageStringFT referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_wind referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libpathplan.2.dylib
_Dtqueue referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_Dttree referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libcdt.2.dylib
_gdImageCreateFromGif referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCreateFromJpeg referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCreateFromPng referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_gdImageCreateFromWBMP referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgvgd.2.dylib
_agxbput_n referenced from libgvc expected to be defined in /usr/local/lib/graphviz/libgraph.2.dylib
/usr/bin/libtool: internal link edit command failed
make: *** [Rgraphviz.so] Error 1
chmod: /private/tmp/Rinst2030499755/Rgraphviz/libs/i386/*: No such file or directory
ERROR: compilation failed for package 'Rgraphviz'
** Removing '/private/tmp/Rinst2030499755/Rgraphviz'
 ERROR
Installation failed.
Removing '/tmp/Rinst2030499755'