Package: affycoretools

Version: 1.5.9

Command: /loc/biocbuild/1.9d/R/bin/R CMD build affycoretools

RetCode: 0

Time: 86.5 seconds

Status: OK

PackageFile: affycoretools_1.5.9.tar.gz

* checking for file 'affycoretools/DESCRIPTION' ... OK
* preparing 'affycoretools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'affycoretools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio

Loading required package: limma

Loading required package: GOstats

Loading required package: graph

Loading required package: Ruuid

Loading required package: GO

Loading required package: annotate

Loading required package: RBGL

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: multtest

Loading required package: Category

Loading required package: KEGG

Loading required package: hgu95av2

Loading required package: biomaRt

Loading required package: XML


Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: RCurl


Attaching package: 'biomaRt'


	The following object(s) are masked from package:annotate :

	 getGO 

** help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example 
  affystart                         text    html    latex
  annBM                             text    html    latex   example
  convert.back                      text    html    latex
  foldFilt                          text    html    latex
  foldFiltBM                        text    html    latex
  getCols                           text    html    latex
  getIndex                          text    html    latex
  getSymbol                         text    html    latex
  getans                            text    html    latex
  hyperG2annaffy                    text    html    latex
  intNames                          text    html    latex
  limma2annaffy                     text    html    latex
  limma2biomaRt                     text    html    latex
  make.cl                           text    html    latex
  makeIndices                       text    html    latex
  pca.legend                        text    html    latex
  plotDeg                           text    html    latex   example
  plotMA                            text    html    latex
  plotPCA                           text    html    latex
  probes2table                      text    html    latex
  probes2tableBM                    text    html    latex
  tableFilt                         text    html    latex
  vennCounts2                       text    html    latex   example
  vennSelect                        text    html    latex
  vennSelectBM                      text    html    latex
** building package indices ...
* DONE (affycoretools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'affycoretools_1.5.9.tar.gz'