Package: affycoretools

Version: 1.5.9

Command: D:\biocbld\1.9d\R\bin\R.exe CMD build affycoretools

RetCode: 1

Time: 22.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'affycoretools/DESCRIPTION' ... OK
* preparing 'affycoretools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst680808688


---------- Making package affycoretools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example chm 
  affystart                         text    html    latex           chm
  annBM                             text    html    latex   example chm
  convert.back                      text    html    latex           chm
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  foldFiltBM                        text    html    latex           chm
  getCols                           text    html    latex           chm
  getIndex                          text    html    latex           chm
  getSymbol                         text    html    latex           chm
  getans                            text    html    latex           chm
  hyperG2annaffy                    text    html    latex           chm
  intNames                          text    html    latex           chm
  limma2annaffy                     text    html    latex           chm
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  make.cl                           text    html    latex           chm
  makeIndices                       text    html    latex           chm
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  plotDeg                           text    html    latex   example chm
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  vennCounts2                       text    html    latex   example chm
  vennSelect                        text    html    latex           chm
  vennSelectBM                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.9d\Rpacks\affycoretools\chm\affycoretools.chm





Compile time: 0 minutes, 0 seconds

26	Topics

43	Local links

0	Internet links

1	Graphic





Created d:\biocbld\1.9d\Rpacks\affycoretools\chm\affycoretools.chm, 52,138 bytes

Compression decreased file by 55,357 bytes.

  preparing package affycoretools for lazy loading
Loading required package: affy

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio

Loading required package: limma

Loading required package: GOstats

Loading required package: graph

Loading required package: Ruuid

Loading required package: GO

Loading required package: annotate

Loading required package: RBGL

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: multtest

Loading required package: Category

Loading required package: KEGG

Loading required package: hgu95av2

Loading required package: biomaRt

Warning in library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) : 
	 there is no package called 'biomaRt'
Error: package 'biomaRt' could not be loaded
Execution halted
make: *** [lazyload] Error 1
*** Installation of affycoretools failed ***

Removing 'D:/biocbld/1.9d/tmpdir/Rinst680808688/affycoretools'
 ERROR
Installation failed.
Removing 'D:/biocbld/1.9d/tmpdir/Rinst680808688'