* checking for file 'macat/DESCRIPTION' ... OK
* preparing 'macat':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'macat' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: annotate
** help
>>> Building/Updating help pages for package 'macat'
Formats: text html latex example
buildMACAT text html latex example
compute.sliding text html latex example
discreteKernelize text html latex example
discretize text html latex
discretize.tscores text html latex example
discretizeAll text html latex example
evalScoring text html latex example
evaluateParameters text html latex example
get.results text html latex example
html text html latex
kernelize text html latex example
kernelizeAll text html latex example
kernelizeToPython text html latex example
kernels text html latex example
loaddatapkg text html latex example
macat-internal text html latex
plot.MACATevalScoring text html latex example
preprocessedLoader text html latex example
pythondata text html latex example
scoring text html latex example
stjd text html latex example
** building package indices ...
* DONE (macat)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Error: chunk 1
Error: Need Package 'reposTools' for automatic download. !
Please, try to obtain package 'stjudem' manually from
http://compdiag.molgen.mpg.de/software
install it and rerun this demo.
Error in buildVignettes(dir = ".") : Error: chunk 1
Error: Need Package 'reposTools' for automatic download. !
Please, try to obtain package 'stjudem' manually from
http://compdiag.molgen.mpg.de/software
install it and rerun this demo.
Execution halted