To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cheung2010")

In most cases, you don't need to download the package archive at all.

cheung2010

   

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see cheung2010.

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: 2.10

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cheung2010")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cheung2010")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cheung2010")

 

PDF arr2hap.pdf
PDF cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual

Details

biocViews ExperimentData, GeneticVariability, RNAseqData
Version 0.0.25
License Artistic 2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
LinkingTo
Suggests SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109
SystemRequirements
Enhances parallel
URL
Depends On Me ggtut
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cheung2010_0.0.25.tar.gz
Windows Binary cheung2010_0.0.25.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/cheung2010/
Package Downloads Report Download Stats

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